Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APPBP2_chr17_60438158_60531242	0/0	t0029	4736	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0030	4736	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0031	4735	1	0	0	1	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0032	4735	1	0	0	0	0	1	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0033	4735	1	0	0	0	0	1	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0034	4736	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0035	4735	1	0	0	1	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0036	4735	1	0	0	1	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0037	4735	1	0	1	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0038	4735	1	0	0	1	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPBP2_chr17_60438158_60531242	0/0	t0039	4734	1	1	0	0	0	0	copy fasta	APPBP2	chr17	60438158	60531242
APPL1_chr3_57222729_57278471	0/0	t0001	3940	93	8	19	42	7	17	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	1/0	t0002	3940	66	8	18	19	4	16	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/1	t0003	3938	41	19	13	0	3	5	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0004	3940	23	21	2	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0005	3940	6	6	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0006	3940	4	4	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0007	3941	3	3	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0008	3939	3	3	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0009	3941	3	2	1	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0010	3940	3	2	1	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0011	3940	2	0	2	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0012	3940	2	0	1	0	0	1	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0013	3941	2	2	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0014	3940	2	2	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0015	3940	2	2	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0016	3940	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0017	3939	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0018	3918	1	0	0	0	0	1	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0019	3941	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0020	3940	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0021	3940	1	0	1	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0022	3938	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0023	3940	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0024	3940	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0025	3940	1	1	0	0	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL1_chr3_57222729_57278471	0/0	t0026	3940	1	0	0	1	0	0	copy fasta	APPL1	chr3	57222729	57278471
APPL2_chr12_105168300_105241174	0/1	t0001	1177	113	9	27	58	5	13	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0002	1177	87	13	19	45	2	8	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0003	1177	75	8	12	47	0	8	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0004	1180	38	24	8	0	1	5	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0005	1177	35	24	7	0	4	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0006	1177	17	0	0	17	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0007	1177	6	3	0	3	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0008	1177	3	0	1	0	0	2	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0009	1177	3	0	1	2	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0010	1177	2	2	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0011	1177	2	2	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0012	1177	2	2	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0013	1177	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174