JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYSMD3_chr5_90510626_90534584	0/0	t0002	3343	107	17	11	67	3	9	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0003	3347	96	16	17	43	7	13	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0004	3339	15	3	0	12	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0005	3342	10	8	2	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0006	3342	10	0	0	10	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0007	3344	5	5	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0008	3318	5	5	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0009	3343	4	3	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0010	3347	3	2	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0011	3343	3	3	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0012	3344	2	2	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0013	3343	2	0	0	0	1	1	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0014	3342	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0015	3342	1	1	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0016	3342	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0017	3342	1	0	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0018	3342	1	0	1	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0019	3342	1	0	0	0	0	1	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0020	3353	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0021	3344	1	1	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0022	3343	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0023	3347	1	1	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0024	3343	1	0	0	0	0	1	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0025	3343	1	1	0	0	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD3_chr5_90510626_90534584	0/0	t0026	3343	1	0	0	1	0	0	copy fasta	LYSMD3	chr5	90510626	90534584
LYSMD4_chr15_99722405_99738437	0/1	t0001	1820	142	5	34	82	4	16	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0002	1820	134	1	27	78	8	20	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0003	1820	65	27	7	22	2	7	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0004	1820	14	13	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	1/0	t0005	1820	11	9	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0006	1820	8	1	2	5	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0007	1820	6	5	0	0	0	1	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0008	1820	5	5	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0009	1820	5	0	4	0	1	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0010	1820	4	0	0	1	0	3	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0011	1820	4	3	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0012	1820	4	4	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0013	1820	4	0	0	4	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0014	1820	4	4	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0015	1820	3	3	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0016	1820	3	3	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0017	1820	3	2	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0018	1820	3	2	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0019	1820	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0020	1820	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0021	1820	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0022	1820	2	2	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0023	1820	2	0	1	0	1	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0024	1820	1	0	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0025	1820	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437