JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYSMD4_chr15_99722405_99738437	0/0	t0026	1820	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0027	1820	1	0	1	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0028	1820	1	0	0	0	0	1	copy fasta	LYSMD4	chr15	99722405	99738437
LYSMD4_chr15_99722405_99738437	0/0	t0029	1820	1	1	0	0	0	0	copy fasta	LYSMD4	chr15	99722405	99738437
LYST_chr1_235656041_235871906	1/1	t0001	2061	207	63	48	61	10	23	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0002	2061	6	3	3	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0003	2061	5	4	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0004	2061	4	0	3	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0005	2061	2	0	0	2	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0006	2061	2	2	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0007	2061	2	2	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0008	2061	2	2	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0009	2061	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0010	2061	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0011	2061	1	1	0	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0012	2061	1	0	0	0	0	1	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0013	2061	1	0	1	0	0	0	copy fasta	LYST	chr1	235656041	235871906
LYST_chr1_235656041_235871906	0/0	t0014	2061	1	0	0	1	0	0	copy fasta	LYST	chr1	235656041	235871906
LYVE1_chr11_10551966_10573665	1/0	t0001	2279	179	52	29	69	8	20	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/1	t0002	2279	121	6	14	89	0	11	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0003	2279	24	1	12	3	3	5	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0004	2279	17	1	9	0	3	4	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0005	2279	12	12	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0006	2279	10	0	8	0	1	1	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0007	2279	7	7	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0008	2279	6	6	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0009	2279	3	3	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0010	2279	3	2	1	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0011	2279	3	2	1	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0012	2279	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0013	2279	1	0	1	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0014	2279	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0015	2279	1	0	0	1	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0016	2279	1	0	0	0	1	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0017	2279	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0018	2279	1	0	1	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0019	2279	1	0	0	0	0	1	copy fasta	LYVE1	chr11	10551966	10573665
LYVE1_chr11_10551966_10573665	0/0	t0020	2279	1	1	0	0	0	0	copy fasta	LYVE1	chr11	10551966	10573665
LYZL1_chr10_29284070_29316232	0/1	t0001	360	330	54	58	187	7	23	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	1/0	t0002	360	84	27	18	22	2	14	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	t0003	360	9	5	2	0	2	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	t0004	360	7	2	0	2	0	3	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	t0005	360	5	2	1	2	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	t0006	360	4	2	1	0	1	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	t0007	360	1	0	0	0	0	1	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	t0008	360	1	0	0	1	0	0	copy fasta	LYZL1	chr10	29284070	29316232
LYZL1_chr10_29284070_29316232	0/0	t0009	360	1	0	0	0	0	1	copy fasta	LYZL1	chr10	29284070	29316232
LYZL2_chr10_30606779_30634753	1/1	t0001	363	445	87	82	211	17	46	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	t0002	363	9	9	0	0	0	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL2_chr10_30606779_30634753	0/0	t0003	363	1	0	0	1	0	0	copy fasta	LYZL2	chr10	30606779	30634753