JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LYZL2_chr10_30606779_30634753	0/0	t0004	363	1	0	0	0	1	0	copy fasta	LYZL2	chr10	30606779	30634753
LYZL4_chr3_42392083_42415610	0/1	t0001	469	228	86	38	75	7	21	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	1/0	t0002	469	166	9	25	91	11	29	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	0/0	t0003	469	1	1	0	0	0	0	copy fasta	LYZL4	chr3	42392083	42415610
LYZL4_chr3_42392083_42415610	0/0	t0004	469	1	0	1	0	0	0	copy fasta	LYZL4	chr3	42392083	42415610
LYZL6_chr17_35929518_35948713	0/1	t0001	628	304	69	48	137	12	37	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0002	628	62	22	15	22	2	1	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0003	628	32	1	2	28	0	1	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0004	626	7	0	0	7	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0005	628	4	4	0	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0006	628	2	0	0	2	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0007	628	1	0	1	0	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0008	628	1	0	0	0	0	1	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0009	628	1	0	0	1	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZL6_chr17_35929518_35948713	0/0	t0010	628	1	0	0	1	0	0	copy fasta	LYZL6	chr17	35929518	35948713
LYZ_chr12_69343381_69359234	0/1	t0001	1057	160	6	26	103	3	21	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0002	1044	111	16	23	55	7	10	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	1/0	t0003	1044	42	2	10	20	2	7	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0004	1058	31	0	4	21	0	6	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0005	1054	20	19	1	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0006	1057	19	17	2	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0007	1054	19	13	4	0	2	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0008	1056	9	2	1	4	2	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0009	1058	8	6	2	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0010	1058	5	0	0	5	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0011	1057	4	0	0	4	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0012	1056	3	3	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0013	1057	2	0	2	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0014	1057	2	2	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0015	1057	2	2	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0016	1059	2	2	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0017	1059	2	0	0	0	0	2	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0018	1044	1	0	0	1	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0019	1057	1	1	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0020	1058	1	1	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0021	1044	1	0	0	1	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0022	1054	1	1	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0023	1057	1	0	0	1	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0024	1057	1	0	1	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0025	1058	1	1	0	0	0	0	copy fasta	LYZ	chr12	69343381	69359234
LYZ_chr12_69343381_69359234	0/0	t0026	1057	1	0	0	1	0	0	copy fasta	LYZ	chr12	69343381	69359234
LZIC_chr1_9921293_9948391	0/0	t0001	4416	120	4	19	80	4	13	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0002	4412	65	22	0	38	0	5	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0003	4412	30	5	3	12	1	9	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0004	4410	23	7	5	9	0	2	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0005	4417	15	1	3	10	0	1	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	1/0	t0006	4417	13	11	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0007	4413	8	7	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0008	4411	6	2	1	1	0	2	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0009	4415	6	0	2	2	0	2	copy fasta	LZIC	chr1	9921293	9948391