JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LZIC_chr1_9921293_9948391	0/0	t0010	4412	5	4	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0011	4409	5	0	5	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0012	4409	5	5	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0013	4416	5	0	5	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0014	4417	5	2	2	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0015	4412	4	0	0	4	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0016	4413	4	1	2	0	1	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0017	4417	4	4	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0018	4417	3	1	0	2	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0019	4417	3	3	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0020	4412	3	0	1	0	2	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0021	4412	2	0	0	2	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0022	4417	2	0	1	0	0	1	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0023	4413	2	1	0	0	0	1	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0024	4412	2	0	0	2	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0025	4415	2	0	1	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0026	4416	2	0	2	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0027	4412	2	0	0	2	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0028	4412	1	0	0	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0029	4410	1	0	0	0	1	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0030	4409	1	1	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0031	4413	1	1	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0032	4412	1	0	0	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0033	4419	1	1	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0034	4416	1	0	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0035	4411	1	0	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0036	4412	1	0	0	0	0	1	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0037	4413	1	0	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0038	4413	1	1	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0039	4413	1	0	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0040	4412	1	1	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/1	t0041	4416	1	0	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0042	4415	1	0	0	0	1	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0043	4416	1	0	0	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0044	4411	1	0	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0045	4416	1	0	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0046	4417	1	0	0	0	0	1	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0047	4415	1	0	0	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0048	4414	1	0	0	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0049	4416	1	0	1	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0050	4417	1	0	0	1	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZIC_chr1_9921293_9948391	0/0	t0051	4416	1	1	0	0	0	0	copy fasta	LZIC	chr1	9921293	9948391
LZTFL1_chr3_45818316_45847119	0/0	t0001	3127	131	10	27	73	6	15	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	1/1	t0002	3127	91	35	20	30	3	1	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0003	3130	58	19	5	27	2	5	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0004	3124	26	0	1	18	3	4	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0005	3126	26	0	1	25	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0006	3127	24	0	7	1	2	14	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0007	3129	8	8	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0008	3127	4	4	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119