JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LZTFL1_chr3_45818316_45847119	0/0	t0009	3127	4	4	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0010	3124	2	2	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0011	3127	2	0	0	2	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0012	3127	2	2	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0013	3127	2	2	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0014	3127	1	0	0	1	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0015	3127	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0016	3127	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0017	3127	1	0	1	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0018	3126	1	0	0	1	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0019	3130	1	0	0	1	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0020	3127	1	0	0	0	0	1	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0021	3130	1	0	0	1	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0022	3127	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTFL1_chr3_45818316_45847119	0/0	t0023	3127	1	1	0	0	0	0	copy fasta	LZTFL1	chr3	45818316	45847119
LZTR1_chr22_20977297_21004032	1/0	t0001	1760	175	48	23	74	4	25	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/1	t0002	1769	79	11	30	23	7	7	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0003	1760	60	0	7	45	3	5	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0004	1760	39	8	6	20	1	4	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0005	1760	29	0	7	22	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0006	1756	15	13	2	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0007	1769	4	3	1	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0008	1760	3	0	0	3	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0009	1760	3	3	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0010	1760	3	0	0	3	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0011	1760	3	0	0	3	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0012	1769	2	0	2	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0013	1760	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0014	1760	2	0	1	0	1	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0015	1760	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0016	1760	2	0	2	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0017	1760	2	2	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0018	1760	1	0	1	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0019	1760	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0020	1769	1	0	1	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0021	1760	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0022	1760	1	0	0	0	0	1	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0023	1760	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0024	1769	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0025	1760	1	0	0	0	1	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0026	1760	1	0	1	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0027	1760	1	0	0	0	0	1	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0028	1760	1	0	0	0	0	1	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0029	1728	1	0	0	0	1	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0030	1756	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0031	1756	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0032	1760	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0033	1760	1	1	0	0	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0034	1760	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0035	1760	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032