JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LZTR1_chr22_20977297_21004032	0/0	t0036	1769	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0037	1760	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTR1_chr22_20977297_21004032	0/0	t0038	1760	1	0	0	1	0	0	copy fasta	LZTR1	chr22	20977297	21004032
LZTS1_chr8_20241165_20308963	0/0	t0001	3915	110	13	26	50	6	15	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0002	3916	56	0	20	26	4	6	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0003	3916	53	7	3	38	2	3	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	1/0	t0004	3916	43	9	18	5	2	8	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0005	3916	18	0	0	16	1	1	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0006	3916	13	4	0	7	0	2	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0007	3915	11	8	1	0	0	2	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0008	3916	9	9	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0009	3916	6	5	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0010	3916	5	5	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0011	3915	4	0	3	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0012	3916	4	0	0	2	0	2	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0013	3915	4	4	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0014	3916	4	2	2	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0015	3916	4	0	0	4	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0016	3915	3	0	0	0	0	3	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0017	3915	3	0	2	0	1	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0018	3916	3	3	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0019	3916	3	3	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0020	3916	3	0	1	2	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0021	3916	3	3	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0022	3916	2	2	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0023	3916	2	0	0	2	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0024	3915	2	2	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0025	3916	2	1	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0026	3915	2	2	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0027	3916	2	0	0	2	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0028	3916	2	2	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0029	3916	2	0	0	2	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0030	3915	2	0	0	2	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0031	3915	1	0	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0032	3916	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0033	3915	1	0	1	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0034	3916	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0035	3915	1	0	0	0	0	1	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0036	3915	1	0	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0037	3915	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0038	3916	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0039	3915	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0040	3915	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0041	3916	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0042	3916	1	0	0	0	0	1	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0043	3916	1	0	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0044	3916	1	0	0	0	0	1	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0045	3916	1	0	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0046	3915	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0047	3915	1	0	0	0	0	1	copy fasta	LZTS1	chr8	20241165	20308963