JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
LZTS1_chr8_20241165_20308963	0/0	t0048	3915	1	0	0	0	1	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/1	t0049	3916	1	0	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0050	3915	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0051	3915	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0052	3915	1	0	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0053	3915	1	0	0	0	1	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0054	3915	1	0	0	1	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0055	3915	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS1_chr8_20241165_20308963	0/0	t0056	3916	1	1	0	0	0	0	copy fasta	LZTS1	chr8	20241165	20308963
LZTS2_chr10_100994808_101012833	1/1	t0001	853	172	49	27	73	6	15	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0002	853	128	31	18	65	3	11	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0003	853	71	12	28	8	8	15	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0004	853	9	0	1	8	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0005	853	6	0	2	0	0	4	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0006	853	4	0	0	4	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0007	853	3	0	0	3	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0008	853	3	1	0	2	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0009	853	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0010	865	1	1	0	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0011	829	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0012	871	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0013	853	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0014	853	1	1	0	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0015	853	1	1	0	0	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0016	853	1	0	0	0	0	1	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0017	853	1	0	0	0	1	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS2_chr10_100994808_101012833	0/0	t0018	889	1	0	0	1	0	0	copy fasta	LZTS2	chr10	100994808	101012833
LZTS3_chr20_3157617_3178549	0/1	t0001	2175	231	62	47	87	9	25	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0002	2175	109	5	3	93	1	7	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	1/0	t0003	2175	62	17	17	14	3	10	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0004	2175	14	2	7	0	4	1	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0005	2175	8	8	0	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0006	2175	6	0	5	0	0	1	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0007	2175	3	0	0	3	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0008	2175	3	3	0	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0009	2175	2	0	2	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0010	2175	1	0	0	0	1	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0011	2175	1	0	0	0	0	1	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0012	2175	1	0	1	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0013	2175	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0014	2175	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0015	2175	1	1	0	0	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0016	2175	1	0	0	1	0	0	copy fasta	LZTS3	chr20	3157617	3178549
LZTS3_chr20_3157617_3178549	0/0	t0017	2175	1	0	0	0	0	1	copy fasta	LZTS3	chr20	3157617	3178549
M1AP_chr2_74552883_74653330	1/1	t0001	952	79	24	20	25	1	7	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0002	954	51	10	7	28	1	5	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0003	952	25	21	0	3	0	1	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0004	955	25	4	5	13	0	3	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0005	953	22	5	4	13	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0006	951	20	18	2	0	0	0	copy fasta	M1AP	chr2	74552883	74653330