JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
M1AP_chr2_74552883_74653330	0/0	t0007	956	7	1	4	2	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0008	952	5	5	0	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0009	952	4	0	0	4	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0010	953	3	3	0	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0011	953	2	0	0	2	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0012	954	1	0	0	1	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0013	953	1	0	1	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0014	952	1	0	0	1	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0015	951	1	1	0	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M1AP_chr2_74552883_74653330	0/0	t0016	952	1	0	1	0	0	0	copy fasta	M1AP	chr2	74552883	74653330
M6PR_chr12_8935361_8954645	1/0	t0001	1616	213	43	37	99	6	27	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/1	t0002	1617	145	19	31	71	7	16	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0003	1616	21	18	3	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0004	1617	6	1	0	5	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0005	1615	4	4	0	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0006	1616	3	2	1	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0007	1617	2	0	2	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0008	1616	2	0	1	0	1	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0009	1617	1	0	0	1	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0010	1616	1	1	0	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0011	1616	1	1	0	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0012	1616	1	0	0	0	0	1	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0013	1616	1	0	1	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0014	1616	1	0	0	1	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0015	1617	1	0	0	1	0	0	copy fasta	M6PR	chr12	8935361	8954645
M6PR_chr12_8935361_8954645	0/0	t0016	1616	1	1	0	0	0	0	copy fasta	M6PR	chr12	8935361	8954645
MAB21L1_chr13_35468789_35481689	0/0	t0001	1816	56	2	0	53	0	1	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/1	t0002	1804	53	5	22	6	12	7	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0003	1828	38	9	10	15	0	4	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0004	1819	33	3	6	21	0	3	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0005	1816	31	3	2	26	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0006	1819	30	7	0	22	0	1	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	1/0	t0007	1822	27	1	1	20	0	4	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0008	1825	23	6	3	11	0	3	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0009	1810	18	9	6	0	3	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0010	1822	17	1	2	11	1	2	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0011	1831	12	4	3	3	1	1	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0012	1798	11	10	1	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0013	1834	9	7	0	2	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0014	1834	8	4	2	1	0	1	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0015	1831	8	0	0	6	0	2	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0016	1807	8	3	1	0	0	4	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0017	1837	7	3	1	0	1	2	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0018	1825	7	0	1	6	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0019	1813	7	2	1	1	0	3	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0020	1828	5	1	0	4	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0021	1795	5	5	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0022	1840	4	3	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0023	1813	4	0	0	0	0	4	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0024	1804	4	3	0	0	0	1	copy fasta	MAB21L1	chr13	35468789	35481689