JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAB21L1_chr13_35468789_35481689	0/0	t0025	1791	4	0	0	2	0	2	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0026	1792	4	0	2	0	0	2	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0027	1843	3	0	3	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0028	1837	3	0	2	0	0	1	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0029	1810	3	0	2	0	0	1	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0030	1801	2	0	0	2	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0031	1801	2	2	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0032	1798	2	1	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0033	1786	2	0	1	0	0	1	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0034	1832	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0035	1838	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0036	1840	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0037	1828	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0038	1825	1	1	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0039	1825	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0040	1822	1	1	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0041	1816	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0042	1816	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0043	1807	1	1	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0044	1804	1	1	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0045	1795	1	1	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0046	1789	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0047	1777	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0048	1810	1	0	0	1	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L1_chr13_35468789_35481689	0/0	t0049	1837	1	1	0	0	0	0	copy fasta	MAB21L1	chr13	35468789	35481689
MAB21L2_chr4_150577151_150589693	0/0	t0001	1463	238	11	54	135	9	29	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	1/1	t0002	1464	125	52	6	54	2	9	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0003	1464	11	11	0	0	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0004	1464	8	8	0	0	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0005	1463	7	7	0	0	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0006	1463	6	0	0	6	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0007	1464	5	2	1	1	0	1	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0008	1463	4	0	0	4	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0009	1464	3	3	0	0	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0010	1463	3	0	3	0	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0011	1464	1	0	0	1	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0012	1463	1	0	0	0	0	1	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0013	1463	1	0	0	0	1	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0014	1463	1	0	0	1	0	0	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0015	1463	1	0	0	0	0	1	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L2_chr4_150577151_150589693	0/0	t0016	1464	1	0	0	0	0	1	copy fasta	MAB21L2	chr4	150577151	150589693
MAB21L3_chr1_116106399_116143149	1/1	t0001	5288	191	8	41	107	7	26	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0002	5288	43	7	6	28	1	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0003	5287	36	0	12	22	0	2	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0004	5289	14	14	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0005	5288	12	2	1	6	1	2	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0006	5288	9	9	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0007	5288	9	8	1	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0008	5288	7	7	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0009	5284	7	7	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149