JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAB21L3_chr1_116106399_116143149	0/0	t0010	5288	6	0	0	6	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0011	5288	6	1	4	0	0	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0012	5288	4	0	0	4	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0013	5288	4	4	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0014	5288	4	4	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0015	5288	4	2	2	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0016	5289	3	3	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0017	5289	3	0	2	0	1	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0018	5288	3	0	0	3	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0019	5288	3	3	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0020	5289	2	2	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0021	5288	2	0	0	2	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0022	5288	2	0	2	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0023	5288	2	0	0	0	2	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0024	5288	2	0	0	0	1	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0025	5288	2	2	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0026	5287	2	2	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0027	5288	2	0	1	0	0	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0028	5289	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0029	5288	1	0	1	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0030	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0031	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0032	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0033	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0034	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0035	5288	1	0	0	0	1	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0036	5284	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0037	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0038	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0039	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0040	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0041	5288	1	0	0	0	0	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0042	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0043	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0044	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0045	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0046	5288	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0047	5288	1	0	0	0	0	1	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0048	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0049	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0050	5288	1	0	0	1	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0051	5284	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0052	5284	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0053	5287	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0054	5287	1	1	0	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L3_chr1_116106399_116143149	0/0	t0055	5287	1	0	1	0	0	0	copy fasta	MAB21L3	chr1	116106399	116143149
MAB21L4_chr2_240881048_240901156	1/0	t0001	1182	132	14	24	62	9	22	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/1	t0002	1182	119	31	21	50	6	10	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0003	1182	87	2	6	75	0	4	copy fasta	MAB21L4	chr2	240881048	240901156
MAB21L4_chr2_240881048_240901156	0/0	t0004	1184	58	17	6	26	1	8	copy fasta	MAB21L4	chr2	240881048	240901156