Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
APPL2_chr12_105168300_105241174	0/0	t0014	1177	1	0	1	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0015	1177	1	1	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0016	1177	1	1	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0017	1177	1	0	0	0	0	1	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0018	1180	1	1	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0019	1177	1	0	0	1	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	1/0	t0020	1177	1	0	0	0	0	0	copy fasta	APPL2	chr12	105168300	105241174
APPL2_chr12_105168300_105241174	0/0	t0021	1177	1	0	0	0	0	1	copy fasta	APPL2	chr12	105168300	105241174
APRT_chr16_88804339_88816928	1/1	t0001	389	375	44	77	200	17	35	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0002	389	25	15	3	2	1	4	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0003	389	10	9	1	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0004	389	10	9	1	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0005	389	8	4	3	0	0	1	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0006	386	5	4	1	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0007	389	2	0	0	0	0	2	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0008	389	2	2	0	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APRT_chr16_88804339_88816928	0/0	t0009	386	1	1	0	0	0	0	copy fasta	APRT	chr16	88804339	88816928
APTX_chr9_32967616_33006628	1/1	t0001	949	375	81	63	178	10	41	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	t0002	949	6	5	1	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	t0003	949	2	2	0	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	t0004	949	2	2	0	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	t0005	949	1	1	0	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	t0006	949	1	1	0	0	0	0	copy fasta	APTX	chr9	32967616	33006628
APTX_chr9_32967616_33006628	0/0	t0007	949	1	0	0	0	0	1	copy fasta	APTX	chr9	32967616	33006628
AQP10_chr1_154316093_154330325	1/1	t0001	909	387	89	74	167	14	41	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	t0002	909	2	2	0	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	t0003	909	1	0	0	0	0	1	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	t0004	909	1	1	0	0	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	t0005	909	1	0	0	1	0	0	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	t0006	909	1	0	0	0	0	1	copy fasta	AQP10	chr1	154316093	154330325
AQP10_chr1_154316093_154330325	0/0	t0007	909	1	0	0	0	0	1	copy fasta	AQP10	chr1	154316093	154330325
AQP11_chr11_77584953_77615356	1/1	t0001	1020	355	70	63	157	15	48	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	t0002	1020	76	19	15	41	1	0	copy fasta	AQP11	chr11	77584953	77615356
AQP11_chr11_77584953_77615356	0/0	t0003	1020	1	1	0	0	0	0	copy fasta	AQP11	chr11	77584953	77615356
AQP12A_chr2_240686866_240703483	1/0	t0001	176	119	21	22	44	13	18	copy fasta	AQP12A	chr2	240686866	240703483
AQP12A_chr2_240686866_240703483	0/0	t0002	176	52	9	16	20	1	6	copy fasta	AQP12A	chr2	240686866	240703483
AQP12B_chr2_240671418_240687885	1/0	t0001	176	172	26	38	68	14	25	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	t0002	176	5	2	0	2	0	1	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	t0003	176	1	1	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP12B_chr2_240671418_240687885	0/0	t0004	176	1	1	0	0	0	0	copy fasta	AQP12B	chr2	240671418	240687885
AQP1_chr7_30906853_30930516	1/1	t0001	1945	198	3	45	113	6	29	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0002	1945	80	11	27	26	3	13	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0003	1950	79	34	7	34	0	4	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0004	1945	30	27	1	0	0	2	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0005	1950	21	6	2	11	0	2	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0006	1950	8	8	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0007	1950	3	3	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0008	1945	2	2	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0009	1945	2	0	1	0	1	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0010	1945	1	0	0	1	0	0	copy fasta	AQP1	chr7	30906853	30930516