JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MACIR_chr5_103253763_103283660	0/0	t0013	2368	2	2	0	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0014	2368	1	0	0	1	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0015	2368	1	1	0	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0016	2368	1	0	1	0	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0017	2368	1	0	0	1	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0018	2368	1	0	0	1	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0019	2368	1	0	0	1	0	0	copy fasta	MACIR	chr5	103253763	103283660
MACIR_chr5_103253763_103283660	0/0	t0020	2368	1	0	0	0	1	0	copy fasta	MACIR	chr5	103253763	103283660
MACO1_chr1_25425897_25505209	1/0	t0001	1946	80	12	11	37	6	13	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/1	t0002	1946	72	7	13	34	4	13	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0003	1946	20	19	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0004	1946	17	14	3	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0005	1947	16	2	4	8	0	2	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0006	1947	14	2	6	4	0	2	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0007	1946	8	7	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0008	1946	8	8	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0009	1947	6	0	1	4	0	1	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0010	1946	4	3	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0011	1946	4	3	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0012	1947	4	0	1	3	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0013	1947	4	0	0	3	0	1	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0014	1946	3	1	2	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0015	1947	2	2	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0016	1947	2	1	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0017	1947	1	0	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0018	1948	1	0	0	1	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0019	1948	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0020	1948	1	0	0	1	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0021	1948	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0022	1946	1	0	0	0	1	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0023	1946	1	0	0	0	1	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0024	1947	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0025	1947	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0026	1947	1	0	0	1	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0027	1948	1	0	0	1	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0028	1946	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0029	1946	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0030	1946	1	0	0	0	1	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0031	1946	1	0	0	1	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0032	1947	1	0	1	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0033	1946	1	0	0	0	1	0	copy fasta	MACO1	chr1	25425897	25505209
MACO1_chr1_25425897_25505209	0/0	t0034	1947	1	1	0	0	0	0	copy fasta	MACO1	chr1	25425897	25505209
MACROD1_chr11_63993558_64171113	1/1	t0001	280	193	70	36	49	4	32	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	t0002	280	4	0	0	4	0	0	copy fasta	MACROD1	chr11	63993558	64171113
MACROD1_chr11_63993558_64171113	0/0	t0003	280	1	0	0	1	0	0	copy fasta	MACROD1	chr11	63993558	64171113
MACROD2_chr20_13990516_16058197	0/0	t0001	3570	7	7	0	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0002	3566	3	1	2	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0003	3570	3	2	0	1	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0004	3566	2	2	0	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0005	3566	1	1	0	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197