JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MACROD2_chr20_13990516_16058197	0/0	t0006	3566	1	0	1	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0007	3566	1	0	1	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0008	3570	1	0	0	1	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0009	3566	1	0	1	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0010	3570	1	1	0	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0011	3570	1	1	0	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0012	3570	1	1	0	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROD2_chr20_13990516_16058197	0/0	t0013	3570	1	0	1	0	0	0	copy fasta	MACROD2	chr20	13990516	16058197
MACROH2A1_chr5_135329381_135404231	0/0	t0001	799	180	60	38	62	4	16	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	t0002	799	31	12	4	10	0	5	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	t0003	799	8	8	0	0	0	0	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A1_chr5_135329381_135404231	0/0	t0004	799	1	0	0	0	0	1	copy fasta	MACROH2A1	chr5	135329381	135404231
MACROH2A2_chr10_70047846_70117282	1/1	t0001	814	278	85	44	103	10	34	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0002	814	51	0	3	45	1	2	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0003	813	34	1	12	21	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0004	813	2	0	0	2	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0005	814	2	0	0	0	0	2	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0006	814	2	2	0	0	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0007	814	1	0	0	0	1	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0008	814	1	0	1	0	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MACROH2A2_chr10_70047846_70117282	0/0	t0009	814	1	0	0	1	0	0	copy fasta	MACROH2A2	chr10	70047846	70117282
MAD1L1_chr7_1810795_2237945	1/1	t0001	539	218	79	36	70	8	23	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0002	539	29	0	11	10	5	3	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0003	539	5	0	5	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0004	539	3	3	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0005	539	2	2	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0006	539	2	2	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0007	539	2	1	0	0	1	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0008	539	1	0	0	1	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0009	539	1	1	0	0	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD1L1_chr7_1810795_2237945	0/0	t0010	539	1	0	0	1	0	0	copy fasta	MAD1L1	chr7	1810795	2237945
MAD2L1BP_chr6_43630840_43645941	1/1	t0001	445	307	75	43	140	12	35	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	t0002	445	41	3	23	5	2	8	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	t0003	445	15	15	0	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	t0004	451	3	3	0	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	t0005	445	2	2	0	0	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	t0006	445	1	0	0	0	0	1	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1BP_chr6_43630840_43645941	0/0	t0007	445	1	0	0	1	0	0	copy fasta	MAD2L1BP	chr6	43630840	43645941
MAD2L1_chr4_120050623_120071848	0/1	t0001	4610	192	22	35	107	7	20	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	1/0	t0002	4610	56	6	14	21	4	10	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0003	4610	31	9	5	13	1	3	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0004	4635	17	6	2	6	0	3	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0005	4610	11	10	0	0	0	1	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0006	4610	7	7	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0007	4610	7	7	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0008	4610	7	0	0	6	0	1	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0009	4610	5	0	0	5	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0010	4635	5	1	3	0	0	1	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0011	4610	5	5	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0012	4610	4	4	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848