JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAD2L1_chr4_120050623_120071848	0/0	t0013	4635	4	1	1	2	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0014	4610	3	3	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0015	4610	2	0	0	0	2	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0016	4610	2	0	0	2	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0017	4610	2	0	0	0	0	2	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0018	4610	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0019	4610	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0020	4610	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0021	4610	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0022	4610	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0023	4610	1	0	0	0	0	1	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0024	4610	1	0	1	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0025	4610	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0026	4610	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0027	4610	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0028	4635	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0029	4635	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0030	4635	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0031	4635	1	0	1	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0032	4610	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0033	4610	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0034	4610	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0035	4610	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0036	4610	1	0	0	1	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0037	4610	1	0	0	0	1	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0038	4610	1	1	0	0	0	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L1_chr4_120050623_120071848	0/0	t0039	4610	1	0	0	0	1	0	copy fasta	MAD2L1	chr4	120050623	120071848
MAD2L2_chr1_11669480_11686148	1/1	t0001	418	428	99	74	189	14	50	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	t0002	418	1	0	0	1	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MAD2L2_chr1_11669480_11686148	0/0	t0003	418	1	1	0	0	0	0	copy fasta	MAD2L2	chr1	11669480	11686148
MADCAM1_chr19_491486_510343	0/0	t0001	393	212	57	30	92	5	28	copy fasta	MADCAM1	chr19	491486	510343
MADCAM1_chr19_491486_510343	1/1	t0002	393	152	39	40	50	9	12	copy fasta	MADCAM1	chr19	491486	510343
MADD_chr11_47265133_47335031	0/1	t0001	1084	303	73	63	112	12	42	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	t0002	1084	19	0	1	13	3	2	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	1/0	t0003	1084	7	6	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	t0004	1084	4	4	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	t0005	1084	3	3	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	t0006	1084	3	3	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	t0007	1084	3	0	0	3	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	t0008	1084	1	1	0	0	0	0	copy fasta	MADD	chr11	47265133	47335031
MADD_chr11_47265133_47335031	0/0	t0009	1084	1	0	0	0	1	0	copy fasta	MADD	chr11	47265133	47335031
MAEA_chr4_1284891_1345137	1/1	t0001	992	356	73	71	150	16	44	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0002	992	4	0	0	4	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0003	992	4	1	3	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0004	992	3	3	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0005	992	3	3	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0006	992	3	3	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0007	992	3	3	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0008	992	3	3	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0009	992	2	0	0	0	0	2	copy fasta	MAEA	chr4	1284891	1345137