JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAEA_chr4_1284891_1345137	0/0	t0010	992	1	1	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0011	992	1	1	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0012	992	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0013	992	1	1	0	0	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0014	992	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0015	992	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEA_chr4_1284891_1345137	0/0	t0016	992	1	0	0	1	0	0	copy fasta	MAEA	chr4	1284891	1345137
MAEL_chr1_166984280_167027214	1/1	t0001	433	403	89	72	186	14	40	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	t0002	433	2	0	0	2	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	t0003	433	1	1	0	0	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	t0004	433	1	1	0	0	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAEL_chr1_166984280_167027214	0/0	t0005	433	1	1	0	0	0	0	copy fasta	MAEL	chr1	166984280	167027214
MAF1_chr8_144099461_144112611	0/1	t0001	944	250	35	67	105	13	29	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	1/0	t0002	945	30	29	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0003	944	25	25	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0004	945	9	1	5	1	1	1	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0005	944	5	0	0	5	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0006	948	4	0	0	2	0	2	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0007	944	3	0	0	0	0	3	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0008	945	2	1	1	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0009	944	1	0	0	0	0	1	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0010	949	1	1	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0011	949	1	1	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0012	944	1	1	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0013	944	1	1	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0014	944	1	0	0	1	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0015	944	1	1	0	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAF1_chr8_144099461_144112611	0/0	t0016	944	1	0	1	0	0	0	copy fasta	MAF1	chr8	144099461	144112611
MAFA_chr8_143423064_143435732	0/0	t0001	1628	93	0	11	69	2	11	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0002	1608	68	22	13	22	1	10	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0003	1608	62	19	17	11	4	11	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/1	t0004	1608	59	17	17	15	1	8	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0005	1628	56	1	8	40	4	3	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0006	1608	14	13	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0007	1608	13	1	0	8	4	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0008	1608	12	0	5	7	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0009	1608	7	0	1	6	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0010	1609	7	1	2	3	0	1	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0011	1628	6	5	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0012	1608	6	6	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0013	1628	3	3	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0014	1629	3	0	1	2	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0015	1609	2	0	1	0	0	1	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0016	1628	2	2	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0017	1608	2	0	2	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0018	1607	2	1	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0019	1608	2	0	0	2	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0020	1629	2	0	0	2	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0021	1628	2	1	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0022	1630	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732