JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAFA_chr8_143423064_143435732	0/0	t0023	1629	1	0	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0024	1629	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0025	1628	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0026	1608	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0027	1608	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0028	1608	1	0	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0029	1609	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0030	1608	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0031	1608	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	1/0	t0032	1608	1	0	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0033	1608	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0034	1628	1	0	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0035	1628	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0036	1608	1	0	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0037	1608	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0038	1607	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0039	1608	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0040	1608	1	1	0	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0041	1608	1	0	0	0	0	1	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0042	1608	1	0	1	0	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0043	1629	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFA_chr8_143423064_143435732	0/0	t0044	1628	1	0	0	1	0	0	copy fasta	MAFA	chr8	143423064	143435732
MAFB_chr20_40680848_40694236	1/1	t0001	2418	238	30	42	118	12	34	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0002	2418	152	45	21	81	0	5	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0003	2418	12	2	3	2	3	2	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0004	2418	4	4	0	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0005	2418	3	0	0	3	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0006	2418	2	0	0	0	0	2	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0007	2418	2	2	0	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0008	2418	1	1	0	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0009	2418	1	0	1	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0010	2418	1	0	0	1	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0011	2418	1	0	1	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0012	2418	1	0	0	1	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0013	2418	1	1	0	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0014	2419	1	0	0	1	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0015	2418	1	0	0	0	0	1	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0016	2417	1	0	0	1	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0017	2418	1	1	0	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0018	2418	1	0	1	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0019	2418	1	0	0	0	1	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0020	2418	1	1	0	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0021	2418	1	0	1	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFB_chr20_40680848_40694236	0/0	t0022	2418	1	1	0	0	0	0	copy fasta	MAFB	chr20	40680848	40694236
MAFF_chr22_38196994_38221507	0/0	t0001	1880	132	15	32	68	3	14	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0002	1880	89	14	25	33	7	10	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	1/1	t0003	1880	46	8	9	15	2	10	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0004	1880	40	7	0	26	0	7	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0005	1880	22	19	3	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0006	1880	17	12	2	1	1	1	copy fasta	MAFF	chr22	38196994	38221507