JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAFF_chr22_38196994_38221507	0/0	t0007	1880	9	8	1	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0008	1880	5	5	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0009	1880	3	0	0	3	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0010	1880	3	0	0	3	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0011	1880	2	0	0	1	0	1	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0012	1880	2	0	1	0	1	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0013	1880	2	2	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0014	1880	1	0	0	0	0	1	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0015	1880	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0016	1880	1	0	0	1	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0017	1880	1	0	1	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0018	1880	1	0	0	1	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0019	1880	1	0	0	1	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0020	1880	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0021	1880	1	0	0	1	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0022	1880	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0023	1880	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0024	1880	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0025	1880	1	0	0	1	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0026	1880	1	1	0	0	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0027	1880	1	0	0	0	0	1	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0028	1880	1	0	0	0	0	1	copy fasta	MAFF	chr22	38196994	38221507
MAFF_chr22_38196994_38221507	0/0	t0029	1880	1	0	0	1	0	0	copy fasta	MAFF	chr22	38196994	38221507
MAFG_chr17_81913270_81932735	0/1	t0001	4573	220	41	44	102	6	26	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0002	4573	58	6	6	37	3	6	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0003	4573	10	9	1	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0004	4573	6	6	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0005	4573	6	0	3	0	1	2	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0006	4573	6	5	1	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0007	4573	5	1	3	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	1/0	t0008	4573	5	2	2	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0009	4573	4	4	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0010	4573	3	0	0	3	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0011	4573	3	0	0	3	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0012	4573	3	3	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0013	4573	2	0	0	2	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0014	4573	2	0	0	2	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0015	4573	2	0	0	2	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0016	4573	2	2	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0017	4573	2	2	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0018	4573	1	1	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0019	4573	1	0	0	0	0	1	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0020	4573	1	1	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0021	4573	1	0	0	0	0	1	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0022	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0023	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0024	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0025	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0026	4573	1	1	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0027	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735