JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAFG_chr17_81913270_81932735	0/0	t0028	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0029	4573	1	0	0	0	0	1	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0030	4563	1	1	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0031	4573	1	1	0	0	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0032	4573	1	0	0	0	0	1	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0033	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFG_chr17_81913270_81932735	0/0	t0034	4573	1	0	0	1	0	0	copy fasta	MAFG	chr17	81913270	81932735
MAFK_chr7_1525702_1548043	0/0	t0001	2910	155	40	21	73	8	13	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	1/1	t0002	2910	84	9	20	40	2	11	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0003	2910	30	6	12	10	1	1	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0004	2910	8	7	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0005	2910	7	0	4	0	0	3	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0006	2910	7	0	0	7	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0007	2902	5	4	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0008	2910	5	0	0	5	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0009	2911	4	1	0	3	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0010	2910	4	3	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0011	2911	3	0	1	2	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0012	2910	3	3	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0013	2910	3	0	0	1	1	1	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0014	2911	3	0	0	3	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0015	2910	3	3	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0016	2910	3	3	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0017	2910	3	0	0	0	0	3	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0018	2910	2	0	0	0	0	2	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0019	2911	2	0	1	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0020	2903	2	0	0	0	0	2	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0021	2910	2	0	0	2	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0022	2910	2	0	0	2	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0023	2910	2	2	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0024	2910	2	2	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0025	2910	2	0	0	0	0	2	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0026	2911	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0027	2911	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0028	2903	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0029	2921	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0030	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0031	2910	1	0	0	0	0	1	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0032	2910	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0033	2910	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0034	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0035	2910	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0036	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0037	2910	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0038	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0039	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0040	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0041	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0042	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0043	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043