Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AQP1_chr7_30906853_30930516	0/0	t0011	1950	1	1	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0012	1950	1	0	0	1	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0013	1950	1	0	0	1	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0014	1945	1	0	1	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0015	1945	1	1	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0016	1945	1	1	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0017	1945	1	0	0	1	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP1_chr7_30906853_30930516	0/0	t0018	1950	1	1	0	0	0	0	copy fasta	AQP1	chr7	30906853	30930516
AQP2_chr12_49945737_49963878	0/0	t0001	3365	107	15	12	62	1	17	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0002	3361	87	6	28	42	4	7	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/1	t0003	3365	78	18	12	36	3	8	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0004	3365	26	1	11	6	5	3	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0005	3365	24	0	2	21	0	1	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0006	3365	21	0	0	21	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	1/0	t0007	3365	17	14	2	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0008	3365	5	0	4	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0009	3365	4	4	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0010	3365	4	4	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0011	3365	4	0	0	0	0	4	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0012	3365	4	4	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0013	3365	3	3	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0014	3365	3	1	2	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0015	3365	3	0	2	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0016	3365	3	3	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0017	3361	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0018	3365	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0019	3365	2	0	1	0	0	1	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0020	3361	2	0	2	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0021	3365	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0022	3361	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0023	3365	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0024	3365	2	0	0	0	0	2	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0025	3365	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0026	3365	2	2	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0027	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0028	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0029	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0030	3365	1	0	1	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0031	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0032	3365	1	0	0	0	0	1	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0033	3365	1	0	0	0	1	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0034	3365	1	0	0	0	1	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0035	3361	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0036	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0037	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0038	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0039	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0040	3326	1	0	1	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0041	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0042	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878