JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAFK_chr7_1525702_1548043	0/0	t0044	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0045	2910	1	0	0	0	0	1	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0046	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0047	2910	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0048	2910	1	0	0	0	0	1	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0049	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0050	2911	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0051	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0052	2910	1	1	0	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0053	2910	1	0	0	0	0	1	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0054	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0055	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0056	2910	1	0	1	0	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0057	2910	1	0	0	1	0	0	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0058	2911	1	0	0	0	0	1	copy fasta	MAFK	chr7	1525702	1548043
MAFK_chr7_1525702_1548043	0/0	t0059	2910	1	0	0	0	0	1	copy fasta	MAFK	chr7	1525702	1548043
MAF_chr16_79588838_79605737	0/0	t0001	1455	151	30	22	91	1	7	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/1	t0002	1455	71	13	11	40	2	4	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0003	1455	51	0	4	42	2	3	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0004	1455	30	0	4	25	0	1	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0005	1455	20	6	10	0	0	4	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0006	1458	19	3	8	1	3	4	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0007	1455	18	10	3	2	1	2	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0008	1458	18	2	9	1	0	6	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0009	1458	14	2	1	7	1	3	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	1/0	t0010	1458	9	8	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0011	1455	7	7	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0012	1456	6	0	2	0	3	1	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0013	1454	4	1	0	0	1	2	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0014	1455	3	0	0	0	0	3	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0015	1455	3	0	0	3	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0016	1449	3	3	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0017	1457	3	0	1	0	0	2	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0018	1455	3	1	0	0	2	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0019	1454	2	0	0	0	0	2	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0020	1455	2	2	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0021	1455	2	2	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0022	1455	2	0	0	0	0	2	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0023	1455	2	0	0	0	0	2	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0024	1449	2	2	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0025	1455	2	0	0	2	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0026	1455	1	0	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0027	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0028	1456	1	0	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0029	1449	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0030	1458	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0031	1449	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0032	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0033	1455	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0034	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737