JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAF_chr16_79588838_79605737	0/0	t0035	1455	1	0	0	0	0	1	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0036	1455	1	0	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0037	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0038	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0039	1455	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0040	1455	1	0	0	0	0	1	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0041	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0042	1454	1	0	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0043	1455	1	0	1	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0044	1449	1	1	0	0	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0045	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAF_chr16_79588838_79605737	0/0	t0046	1455	1	0	0	1	0	0	copy fasta	MAF	chr16	79588838	79605737
MAGEA10_chrX_152128310_152143577	1/1	t0001	1543	220	48	48	89	8	25	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0002	1542	16	3	1	9	1	2	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0003	1542	8	7	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0004	1542	7	7	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0005	1543	7	0	0	7	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0006	1544	5	2	2	0	0	1	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0007	1545	3	3	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0008	1543	3	2	1	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0009	1544	2	2	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0010	1543	1	0	0	1	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0011	1543	1	1	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0012	1543	1	0	0	0	0	1	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0013	1543	1	0	0	1	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0014	1559	1	1	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0015	1539	1	0	0	1	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0016	1541	1	1	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0017	1544	1	0	0	0	0	1	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0018	1542	1	0	0	1	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0019	1542	1	0	0	1	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA10_chrX_152128310_152143577	0/0	t0020	1543	1	1	0	0	0	0	copy fasta	MAGEA10	chrX	152128310	152143577
MAGEA11_chrX_149707060_149722268	1/1	t0001	613	216	13	33	138	4	26	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	t0002	613	92	62	19	3	6	2	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	t0003	613	2	2	0	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	t0004	613	1	1	0	0	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA11_chrX_149707060_149722268	0/0	t0005	613	1	0	0	1	0	0	copy fasta	MAGEA11	chrX	149707060	149722268
MAGEA12_chrX_152728757_152742669	0/0	t0001	848	161	20	21	97	3	20	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	1/1	t0002	848	129	37	36	42	6	6	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0003	848	9	8	1	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0004	846	7	3	0	2	0	2	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0005	848	5	5	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0006	848	3	3	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0007	849	2	0	0	2	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0008	848	2	0	0	0	0	2	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0009	848	1	1	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0010	848	1	1	0	0	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0011	850	1	0	0	1	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA12_chrX_152728757_152742669	0/0	t0012	859	1	0	0	1	0	0	copy fasta	MAGEA12	chrX	152728757	152742669
MAGEA1_chrX_153174284_153188880	1/1	t0001	782	180	57	42	49	10	20	copy fasta	MAGEA1	chrX	153174284	153188880