JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGEA1_chrX_153174284_153188880	0/0	t0002	782	94	10	15	67	0	2	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0003	782	44	2	5	25	1	11	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0004	782	9	7	2	0	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0005	782	8	0	0	8	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0006	782	1	1	0	0	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0007	781	1	0	0	1	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0008	782	1	0	1	0	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0009	782	1	1	0	0	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0010	781	1	0	0	1	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0011	783	1	0	0	1	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0012	782	1	0	0	0	0	1	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA1_chrX_153174284_153188880	0/0	t0013	782	1	1	0	0	0	0	copy fasta	MAGEA1	chrX	153174284	153188880
MAGEA2B_chrX_152709628_152723607	0/0	t0001	942	221	54	37	101	5	24	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0002	942	16	4	4	7	1	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0003	942	4	0	0	4	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0004	942	3	3	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0005	941	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0006	943	1	0	0	1	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0007	942	1	0	0	1	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0008	942	1	0	0	1	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0009	942	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0010	943	1	0	1	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0011	943	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0012	951	1	0	1	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0013	943	1	0	0	1	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0014	942	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0015	941	1	0	0	0	0	1	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0016	941	1	0	0	1	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2B_chrX_152709628_152723607	0/0	t0017	942	1	1	0	0	0	0	copy fasta	MAGEA2B	chrX	152709628	152723607
MAGEA2_chrX_152744863_152758842	0/0	t0001	942	165	36	31	64	7	27	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0002	942	11	0	4	6	1	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0003	942	3	3	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0004	942	2	0	0	2	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0005	943	1	0	0	0	0	1	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0006	941	1	1	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0007	944	1	0	0	1	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0008	942	1	1	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0009	942	1	0	0	0	0	1	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0010	942	1	1	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0011	943	1	0	0	1	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0012	943	1	0	0	1	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0013	942	1	1	0	0	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA2_chrX_152744863_152758842	0/0	t0014	942	1	0	0	1	0	0	copy fasta	MAGEA2	chrX	152744863	152758842
MAGEA3_chrX_152693794_152707347	1/1	t0001	738	134	24	28	55	10	15	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0002	738	23	2	1	16	2	2	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0003	738	12	0	4	7	1	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0004	738	5	5	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0005	738	3	0	0	3	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0006	738	2	0	0	2	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0007	738	2	0	0	2	0	0	copy fasta	MAGEA3	chrX	152693794	152707347