JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGEA3_chrX_152693794_152707347	0/0	t0008	738	2	2	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0009	738	2	0	0	2	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0010	738	2	2	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0011	738	1	1	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0012	738	1	0	0	1	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0013	738	1	1	0	0	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0014	693	1	0	0	1	0	0	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA3_chrX_152693794_152707347	0/0	t0015	738	1	0	0	0	0	1	copy fasta	MAGEA3	chrX	152693794	152707347
MAGEA4_chrX_151907889_151930170	0/0	t0001	771	173	30	23	101	6	13	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	1/1	t0002	771	164	38	32	68	5	19	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	t0003	771	3	3	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	t0004	767	1	1	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	t0005	771	1	0	0	1	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	t0006	771	1	1	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA4_chrX_151907889_151930170	0/0	t0007	771	1	1	0	0	0	0	copy fasta	MAGEA4	chrX	151907889	151930170
MAGEA6_chrX_152761136_152774689	1/0	t0001	738	52	7	12	22	5	5	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0002	738	46	8	5	22	1	10	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0003	738	21	8	6	6	1	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/1	t0004	738	16	4	7	4	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0005	738	15	15	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0006	738	8	2	0	4	1	1	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0007	738	2	0	0	2	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0008	738	2	2	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0009	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0010	734	1	0	0	0	1	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0011	738	1	0	1	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0012	737	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0013	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0014	740	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0015	742	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0016	737	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0017	738	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0018	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0019	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0020	737	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0021	738	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0022	738	1	0	0	1	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0023	738	1	0	0	0	0	1	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0024	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0025	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0026	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0027	738	1	0	1	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0028	738	1	1	0	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA6_chrX_152761136_152774689	0/0	t0029	740	1	0	1	0	0	0	copy fasta	MAGEA6	chrX	152761136	152774689
MAGEA8_chrX_149876183_149890825	1/1	t0001	825	272	67	47	112	11	33	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	t0002	825	7	6	1	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	t0003	825	2	0	0	2	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	t0004	825	2	2	0	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	t0005	825	1	0	0	1	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	t0006	819	1	0	1	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825