JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGEA8_chrX_149876183_149890825	0/0	t0007	822	1	0	1	0	0	0	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA8_chrX_149876183_149890825	0/0	t0008	825	1	0	0	0	0	1	copy fasta	MAGEA8	chrX	149876183	149890825
MAGEA9B_chrX_149576653_149592459	0/0	t0001	867	140	15	30	69	9	17	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	t0002	867	68	30	12	19	2	5	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	t0003	867	29	19	0	9	0	1	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	t0004	867	2	0	0	1	0	1	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	t0005	866	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	t0006	875	1	1	0	0	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9B_chrX_149576653_149592459	0/0	t0007	866	1	0	0	1	0	0	copy fasta	MAGEA9B	chrX	149576653	149592459
MAGEA9_chrX_149776930_149792737	0/0	t0001	867	121	5	27	68	8	13	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0002	867	71	29	8	16	3	15	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0003	867	56	20	15	20	0	1	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0004	867	9	8	1	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0005	867	3	0	0	3	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0006	866	2	0	0	2	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0007	867	2	0	2	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0008	866	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0009	867	1	1	0	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0010	864	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0011	867	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0012	866	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0013	867	1	1	0	0	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0014	868	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0015	867	1	0	0	0	0	1	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEA9_chrX_149776930_149792737	0/0	t0016	868	1	0	0	1	0	0	copy fasta	MAGEA9	chrX	149776930	149792737
MAGEB10_chrX_27802990_27828014	1/1	t0001	910	185	39	33	81	9	21	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	t0002	910	60	25	18	10	2	5	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	t0003	910	4	4	0	0	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB10_chrX_27802990_27828014	0/0	t0004	911	1	0	0	1	0	0	copy fasta	MAGEB10	chrX	27802990	27828014
MAGEB16_chrX_35793342_35808772	0/1	t0001	745	160	15	24	93	8	19	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	1/0	t0002	745	75	11	18	29	3	13	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0003	745	11	10	1	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0004	745	10	10	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0005	745	10	10	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0006	745	4	4	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0007	746	3	3	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0008	745	3	3	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0009	746	3	2	1	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0010	745	2	2	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0011	745	2	2	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0012	746	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0013	745	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0014	745	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0015	745	1	1	0	0	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB16_chrX_35793342_35808772	0/0	t0016	745	1	0	0	1	0	0	copy fasta	MAGEB16	chrX	35793342	35808772
MAGEB17_chrX_16162481_16176464	1/1	t0001	424	282	70	61	112	9	28	copy fasta	MAGEB17	chrX	16162481	16176464
MAGEB18_chrX_26133343_26145736	1/0	t0001	781	184	46	40	79	6	12	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/1	t0002	781	94	18	16	47	4	8	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0003	783	36	5	5	18	1	7	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0004	781	5	5	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736