JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGEB18_chrX_26133343_26145736	0/0	t0005	782	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0006	783	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0007	781	1	0	0	0	0	1	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0008	781	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0009	781	1	1	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0010	780	1	0	0	1	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB18_chrX_26133343_26145736	0/0	t0011	782	1	1	0	0	0	0	copy fasta	MAGEB18	chrX	26133343	26145736
MAGEB1_chrX_30242146_30257040	0/1	t0001	675	324	74	54	155	13	27	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	t0002	675	5	0	0	5	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	1/0	t0003	675	3	0	2	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	t0004	675	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	t0005	675	1	0	0	0	0	1	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	t0006	674	1	0	1	0	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	t0007	671	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	t0008	675	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB1_chrX_30242146_30257040	0/0	t0009	677	1	0	0	1	0	0	copy fasta	MAGEB1	chrX	30242146	30257040
MAGEB2_chrX_30210563_30225089	1/0	t0001	648	223	30	32	130	5	25	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0002	647	41	23	12	2	3	1	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/1	t0003	649	27	4	13	5	3	1	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0004	648	13	11	2	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0005	647	3	3	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0006	648	3	3	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0007	648	2	1	0	0	0	1	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0008	648	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0009	650	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0010	647	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0011	644	1	1	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0012	648	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0013	648	1	0	0	1	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0014	648	1	1	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB2_chrX_30210563_30225089	0/0	t0015	648	1	1	0	0	0	0	copy fasta	MAGEB2	chrX	30210563	30225089
MAGEB3_chrX_30225657_30242495	0/1	t0001	1047	222	61	51	78	11	20	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	1/0	t0002	1047	81	11	5	59	0	5	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0003	1047	12	0	0	12	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0004	1047	7	0	4	1	2	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0005	1047	6	0	0	6	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0006	957	3	0	0	3	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0007	1047	3	3	0	0	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0008	1045	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0009	1047	1	0	0	0	0	1	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0010	1047	1	1	0	0	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB3_chrX_30225657_30242495	0/0	t0011	1046	1	0	0	1	0	0	copy fasta	MAGEB3	chrX	30225657	30242495
MAGEB4_chrX_30237000_30249187	1/1	t0001	1148	333	73	59	157	13	29	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	t0002	1148	5	5	0	0	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	t0003	1148	2	0	0	2	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	t0004	1148	2	0	0	0	0	2	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	t0005	1122	1	0	0	0	0	1	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	t0006	1148	1	0	0	1	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB4_chrX_30237000_30249187	0/0	t0007	1147	1	0	0	1	0	0	copy fasta	MAGEB4	chrX	30237000	30249187
MAGEB5_chrX_26211169_26223270	1/1	t0001	389	330	78	59	150	11	30	copy fasta	MAGEB5	chrX	26211169	26223270