JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGED4B_chrX_52056827_52074183	0/0	t0001	288	212	52	39	91	11	19	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	t0002	288	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	t0003	288	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	t0004	288	1	0	0	0	0	1	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4B_chrX_52056827_52074183	0/0	t0005	288	1	1	0	0	0	0	copy fasta	MAGED4B	chrX	52056827	52074183
MAGED4_chrX_52179888_52197268	0/0	t0001	312	213	53	46	91	4	19	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	t0002	314	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	t0003	312	1	1	0	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	t0004	313	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	t0005	312	1	0	0	0	0	1	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	t0006	312	1	0	0	0	0	1	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	t0007	312	1	1	0	0	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGED4_chrX_52179888_52197268	0/0	t0008	312	1	0	0	1	0	0	copy fasta	MAGED4	chrX	52179888	52197268
MAGEE1_chrX_76422710_76436342	1/1	t0001	760	287	75	52	115	11	32	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	t0002	761	1	1	0	0	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	t0003	761	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	t0004	761	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	t0005	761	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE1_chrX_76422710_76436342	0/0	t0006	759	1	0	0	1	0	0	copy fasta	MAGEE1	chrX	76422710	76436342
MAGEE2_chrX_75777987_75790254	1/1	t0001	697	276	78	54	99	11	32	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEE2_chrX_75777987_75790254	0/0	t0002	699	1	0	0	1	0	0	copy fasta	MAGEE2	chrX	75777987	75790254
MAGEF1_chr3_184705364_184717064	1/0	t0001	778	242	50	35	136	1	19	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/1	t0002	778	203	41	44	77	13	27	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	t0003	778	5	5	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	t0004	778	2	2	0	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	t0005	778	2	0	0	0	0	2	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	t0006	778	1	0	0	1	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEF1_chr3_184705364_184717064	0/0	t0007	778	1	0	1	0	0	0	copy fasta	MAGEF1	chr3	184705364	184717064
MAGEH1_chrX_55447127_55458566	1/1	t0001	781	299	71	60	124	11	31	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	t0002	781	2	2	0	0	0	0	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	t0003	781	1	0	0	1	0	0	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	t0004	781	1	0	0	1	0	0	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEH1_chrX_55447127_55458566	0/0	t0005	778	1	0	0	1	0	0	copy fasta	MAGEH1	chrX	55447127	55458566
MAGEL2_chr15_23638549_23652867	0/0	t0001	570	354	87	59	160	13	35	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	1/1	t0002	570	77	5	18	40	5	7	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	t0003	570	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	t0004	570	1	0	1	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	t0005	570	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	t0006	570	1	1	0	0	0	0	copy fasta	MAGEL2	chr15	23638549	23652867
MAGEL2_chr15_23638549_23652867	0/0	t0007	570	1	0	0	0	0	1	copy fasta	MAGEL2	chr15	23638549	23652867
MAGI1_chr3_65348526_66043918	0/0	t0001	3463	76	36	20	5	5	10	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0002	3463	12	9	2	1	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0003	3463	6	2	1	0	1	2	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0004	3463	1	0	1	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0005	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0006	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0007	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0008	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0009	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0010	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918