JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGI1_chr3_65348526_66043918	0/0	t0011	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0012	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI1_chr3_65348526_66043918	0/0	t0013	3463	1	1	0	0	0	0	copy fasta	MAGI1	chr3	65348526	66043918
MAGI2_chr7_78012055_79458667	0/0	t0001	2608	27	23	4	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	t0002	2608	9	5	2	0	2	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	t0003	2608	1	0	1	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	t0004	2608	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	t0005	2608	1	1	0	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI2_chr7_78012055_79458667	0/0	t0006	2608	1	0	1	0	0	0	copy fasta	MAGI2	chr7	78012055	79458667
MAGI3_chr1_113385515_113690923	0/0	t0001	2429	63	10	17	28	3	5	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0002	2429	61	8	16	22	6	9	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0003	2429	58	1	10	43	1	3	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0004	2430	31	0	4	22	1	4	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0005	2430	6	0	0	6	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/1	t0006	2429	4	3	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0007	2429	3	0	2	1	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0008	2429	2	0	1	0	1	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0009	2429	1	1	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0010	2429	1	1	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0011	2429	1	0	0	0	0	1	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0012	2429	1	0	0	1	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0013	2429	1	1	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0014	2429	1	1	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	0/0	t0015	2430	1	0	0	1	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGI3_chr1_113385515_113690923	1/0	t0016	2429	1	0	0	0	0	0	copy fasta	MAGI3	chr1	113385515	113690923
MAGIX_chrX_49157758_49173774	0/1	t0001	2506	142	23	32	66	4	16	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0002	2507	23	1	5	6	1	10	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	1/0	t0003	2508	19	14	4	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0004	2505	18	8	4	3	3	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0005	2506	9	9	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0006	2506	8	0	4	0	2	2	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0007	2509	4	4	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0008	2506	4	4	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0009	2508	2	2	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0010	2507	2	2	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0011	2506	2	2	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0012	2504	2	2	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0013	2507	2	0	2	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0014	2505	2	0	2	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0015	2508	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0016	2507	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0017	2508	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0018	2504	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0019	2503	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0020	2507	1	0	1	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0021	2501	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0022	2505	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0023	2501	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0024	2509	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0025	2508	1	0	0	0	0	1	copy fasta	MAGIX	chrX	49157758	49173774