JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGIX_chrX_49157758_49173774	0/0	t0026	2506	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0027	2508	1	0	1	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0028	2506	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0029	2505	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0030	2507	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0031	2506	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0032	2507	1	0	0	1	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0033	2507	1	1	0	0	0	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0034	2506	1	0	0	0	0	1	copy fasta	MAGIX	chrX	49157758	49173774
MAGIX_chrX_49157758_49173774	0/0	t0035	2506	1	0	0	0	1	0	copy fasta	MAGIX	chrX	49157758	49173774
MAGOHB_chr12_10599193_10618609	0/1	t0001	2160	139	9	22	90	2	15	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0002	2161	103	14	23	45	8	13	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	1/0	t0003	2160	39	16	10	0	3	9	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0004	2160	20	17	3	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0005	2160	10	7	3	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0006	2150	7	6	1	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0007	2160	7	6	1	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0008	2160	7	0	4	0	2	1	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0009	2161	6	6	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0010	2165	6	0	0	6	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0011	2160	4	4	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0012	2157	4	2	2	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0013	2161	3	0	2	0	0	1	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0014	2161	3	3	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0015	2160	3	0	0	3	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0016	2161	2	2	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0017	2161	2	0	0	2	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0018	2160	2	0	2	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0019	2160	2	0	1	0	0	1	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0020	2160	2	0	2	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0021	2160	1	0	0	1	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0022	2160	1	0	1	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0023	2161	1	1	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0024	2161	1	0	0	0	1	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0025	2150	1	1	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0026	2150	1	0	0	1	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0027	2160	1	1	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0028	2160	1	1	0	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOHB_chr12_10599193_10618609	0/0	t0029	2160	1	0	1	0	0	0	copy fasta	MAGOHB	chr12	10599193	10618609
MAGOH_chr1_53221900_53243518	1/1	t0001	216	435	98	72	214	12	37	copy fasta	MAGOH	chr1	53221900	53243518
MAGOH_chr1_53221900_53243518	0/0	t0002	216	2	0	0	2	0	0	copy fasta	MAGOH	chr1	53221900	53243518
MAGOH_chr1_53221900_53243518	0/0	t0003	216	1	0	0	0	0	1	copy fasta	MAGOH	chr1	53221900	53243518
MAGT1_chrX_77820747_77900435	1/1	t0001	3499	241	54	38	110	11	26	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0002	3499	6	6	0	0	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0003	3497	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0004	3499	1	1	0	0	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0005	3499	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0006	3499	1	0	1	0	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0007	3499	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0008	3499	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435