Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AQP2_chr12_49945737_49963878	0/0	t0043	3397	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0044	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0045	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0046	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0047	3365	1	0	0	0	1	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0048	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0049	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0050	3361	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0051	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0052	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0053	3365	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0054	3361	1	0	0	1	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP2_chr12_49945737_49963878	0/0	t0055	3365	1	1	0	0	0	0	copy fasta	AQP2	chr12	49945737	49963878
AQP3_chr9_33436160_33452593	1/1	t0001	947	140	23	19	74	7	15	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0002	948	61	6	11	33	4	7	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0003	948	52	1	11	34	2	4	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0004	947	22	2	9	9	0	2	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0005	938	21	18	2	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0006	938	19	16	2	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0007	947	18	0	6	11	1	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0008	947	13	0	2	7	1	3	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0009	946	13	1	4	0	2	6	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0010	948	11	0	0	11	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0011	948	11	7	0	4	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0012	948	10	6	0	4	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0013	947	8	1	0	6	0	1	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0014	940	7	5	2	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0015	946	6	0	6	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0016	947	5	0	0	4	0	1	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0017	947	3	0	0	2	0	1	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0018	927	3	3	0	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0019	928	3	3	0	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0020	947	3	1	0	2	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0021	953	3	0	3	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0022	948	3	0	0	1	0	2	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0023	946	3	0	1	0	1	1	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0024	948	3	0	0	2	0	1	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0025	947	2	0	0	0	0	2	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0026	947	2	0	0	2	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0027	928	2	2	0	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0028	928	1	1	0	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0029	948	1	0	1	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0030	948	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0031	947	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0032	948	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0033	947	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0034	947	1	0	1	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0035	947	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0036	947	1	0	0	0	0	1	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0037	938	1	0	0	0	0	1	copy fasta	AQP3	chr9	33436160	33452593