JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAGT1_chrX_77820747_77900435	0/0	t0009	3498	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0010	3499	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0011	3500	1	0	0	0	0	1	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0012	3499	1	0	0	0	0	1	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0013	3499	1	1	0	0	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0014	3499	1	0	1	0	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAGT1_chrX_77820747_77900435	0/0	t0015	3501	1	0	0	1	0	0	copy fasta	MAGT1	chrX	77820747	77900435
MAG_chr19_35287161_35318807	1/1	t0001	477	397	77	70	201	14	33	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	t0002	477	35	19	4	1	3	8	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	t0003	477	1	0	0	0	0	1	copy fasta	MAG	chr19	35287161	35318807
MAG_chr19_35287161_35318807	0/0	t0004	477	1	0	0	0	1	0	copy fasta	MAG	chr19	35287161	35318807
MAIP1_chr2_199950582_199969117	0/1	t0001	524	295	74	54	121	13	32	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	t0002	524	65	4	7	47	1	6	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	1/0	t0003	524	61	9	6	42	1	2	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	t0004	524	1	1	0	0	0	0	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	t0005	524	1	0	1	0	0	0	copy fasta	MAIP1	chr2	199950582	199969117
MAIP1_chr2_199950582_199969117	0/0	t0006	524	1	0	0	0	1	0	copy fasta	MAIP1	chr2	199950582	199969117
MAJIN_chr11_64933230_64977108	1/1	t0001	641	368	81	57	178	16	34	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	t0002	641	12	10	2	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	t0003	641	1	1	0	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	t0004	641	1	1	0	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	t0005	641	1	1	0	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAJIN_chr11_64933230_64977108	0/0	t0006	641	1	0	1	0	0	0	copy fasta	MAJIN	chr11	64933230	64977108
MAK16_chr8_33480182_33506262	0/1	t0001	2659	139	38	31	51	4	14	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	1/0	t0002	2659	132	22	26	70	1	12	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0003	2660	52	0	2	43	5	2	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0004	2659	17	13	2	0	2	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0005	2658	14	0	0	9	0	5	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0006	2658	6	1	1	4	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0007	2658	6	1	0	5	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0008	2659	3	0	0	0	0	3	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0009	2660	3	3	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0010	2659	2	2	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0011	2659	2	2	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0012	2660	2	0	0	2	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0013	2660	2	2	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0014	2660	2	0	2	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0015	2659	1	0	0	0	0	1	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0016	2659	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0017	2659	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0018	2659	1	0	0	0	0	1	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0019	2659	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0020	2659	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0021	2659	1	0	0	0	0	1	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0022	2659	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0023	2660	1	0	0	0	0	1	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0024	2658	1	0	0	1	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0025	2659	1	0	1	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0026	2659	1	0	1	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0027	2660	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262