JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAK16_chr8_33480182_33506262	0/0	t0028	2659	1	0	0	1	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0029	2661	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0030	2661	1	0	1	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0031	2658	1	0	1	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK16_chr8_33480182_33506262	0/0	t0032	2660	1	1	0	0	0	0	copy fasta	MAK16	chr8	33480182	33506262
MAK_chr6_10757723_10843539	0/1	t0001	1996	163	27	43	69	4	19	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0002	1995	38	31	6	0	1	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	1/0	t0003	1996	37	7	15	5	3	6	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0004	1995	17	17	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0005	1996	4	0	0	4	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0006	1996	3	2	1	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0007	1995	2	2	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0008	1995	2	2	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0009	1996	1	0	0	0	0	1	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0010	1995	1	1	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0011	1996	1	0	0	1	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0012	1996	1	1	0	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0013	1996	1	0	1	0	0	0	copy fasta	MAK	chr6	10757723	10843539
MAK_chr6_10757723_10843539	0/0	t0014	1997	1	0	0	1	0	0	copy fasta	MAK	chr6	10757723	10843539
MAL2_chr8_119203363_119250673	1/1	t0001	2296	205	41	44	88	10	20	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0002	2288	103	8	14	62	4	15	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0003	2299	40	21	2	13	0	4	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0004	2288	9	9	0	0	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0005	2299	7	7	0	0	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0006	2296	4	0	0	4	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0007	2296	3	1	2	0	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0008	2299	3	0	2	0	1	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0009	2313	3	3	0	0	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0010	2288	1	0	1	0	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0011	2288	1	0	1	0	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0012	2296	1	0	0	1	0	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0013	2296	1	0	0	0	1	0	copy fasta	MAL2	chr8	119203363	119250673
MAL2_chr8_119203363_119250673	0/0	t0014	2288	1	0	0	0	0	1	copy fasta	MAL2	chr8	119203363	119250673
MALL_chr2_110078870_110120822	0/0	t0001	1853	139	20	31	68	5	15	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0002	1853	56	11	6	28	5	6	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0003	1851	19	17	2	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0004	1851	17	3	8	6	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	1/0	t0005	1856	12	10	1	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0006	1854	12	11	1	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0007	1851	12	0	4	8	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0008	1853	10	0	0	8	0	2	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0009	1855	5	4	1	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0010	1854	4	0	0	3	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0011	1853	3	0	0	3	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0012	1856	3	3	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0013	1851	3	0	3	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0014	1854	3	0	0	2	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0015	1856	2	0	1	0	1	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0016	1856	2	0	1	0	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0017	1858	2	0	0	0	1	1	copy fasta	MALL	chr2	110078870	110120822