JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MALL_chr2_110078870_110120822	0/0	t0018	1853	2	0	0	0	1	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0019	1854	2	1	0	1	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0020	1851	2	0	0	2	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0021	1855	2	2	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0022	1854	2	2	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0023	1853	2	0	1	0	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0024	1855	1	1	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0025	1856	1	0	0	1	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0026	1858	1	0	0	1	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0027	1858	1	1	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0028	1858	1	0	0	1	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0029	1851	1	1	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0030	1858	1	0	0	0	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0031	1856	1	0	1	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0032	1853	1	0	1	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0033	1853	1	0	1	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0034	1853	1	0	0	0	1	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0035	1853	1	0	1	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0036	1853	1	0	0	0	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0037	1853	1	0	0	0	0	1	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0038	1855	1	1	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0039	1858	1	1	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0040	1851	1	0	0	1	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0041	1855	1	1	0	0	0	0	copy fasta	MALL	chr2	110078870	110120822
MALL_chr2_110078870_110120822	0/0	t0042	1864	1	0	0	1	0	0	copy fasta	MALL	chr2	110078870	110120822
MALRD1_chr10_19043801_19739478	1/1	t0001	380	114	37	21	35	4	15	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	t0002	380	35	25	7	3	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	t0003	380	2	1	0	0	0	1	copy fasta	MALRD1	chr10	19043801	19739478
MALRD1_chr10_19043801_19739478	0/0	t0004	380	1	1	0	0	0	0	copy fasta	MALRD1	chr10	19043801	19739478
MALSU1_chr7_23294339_23316729	1/0	t0001	2201	246	47	50	109	9	30	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0002	2199	57	0	10	43	1	3	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0003	2198	21	3	8	4	0	6	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0004	2198	19	5	1	13	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0005	2201	15	0	0	15	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/1	t0006	2199	8	1	2	0	4	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0007	2198	8	7	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0008	2201	7	7	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0009	2202	7	6	1	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0010	2201	5	5	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0011	2205	4	0	0	3	0	1	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0012	2198	4	0	0	4	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0013	2201	4	4	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0014	2200	3	0	1	1	1	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0015	2198	2	2	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0016	2197	2	2	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0017	2201	2	0	0	0	0	2	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0018	2201	2	1	0	0	0	1	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0019	2201	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0020	2201	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0021	2201	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729