JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MALSU1_chr7_23294339_23316729	0/0	t0022	2200	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0023	2198	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0024	2199	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0025	2201	1	0	1	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0026	2201	1	0	0	0	0	1	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0027	2201	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0028	2201	1	0	0	0	0	1	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0029	2201	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0030	2201	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0031	2201	1	0	0	0	1	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0032	2199	1	0	0	0	0	1	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0033	2201	1	0	0	1	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0034	2201	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0035	2198	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALSU1_chr7_23294339_23316729	0/0	t0036	2201	1	1	0	0	0	0	copy fasta	MALSU1	chr7	23294339	23316729
MALT1_chr18_58666465_58759477	0/0	t0001	6815	56	3	12	31	3	7	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0002	6815	54	0	11	33	3	7	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0003	6818	51	10	12	22	1	6	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0004	6813	29	0	2	21	0	6	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/1	t0005	6807	25	1	10	8	0	5	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0006	6804	18	0	2	16	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0007	6814	15	11	4	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0008	6818	11	1	0	6	0	4	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0009	6814	8	8	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0010	6816	8	1	0	7	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	1/0	t0011	6815	8	7	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0012	6804	7	7	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0013	6819	6	0	4	2	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0014	6815	5	0	0	5	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0015	6814	5	0	0	5	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0016	6815	4	1	2	0	1	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0017	6819	4	0	0	4	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0018	6804	4	3	1	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0019	6815	3	0	2	0	1	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0020	6804	3	0	0	3	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0021	6819	3	0	0	3	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0022	6815	3	0	0	3	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0023	6814	3	0	0	3	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0024	6814	3	3	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0025	6818	3	2	1	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0026	6812	3	3	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0027	6814	3	3	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0028	6804	2	1	1	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0029	6816	2	0	0	1	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0030	6815	2	0	0	0	2	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0031	6814	2	2	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0032	6818	2	0	1	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0033	6818	2	0	1	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0034	6819	2	2	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0035	6818	2	1	1	0	0	0	copy fasta	MALT1	chr18	58666465	58759477