JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MALT1_chr18_58666465_58759477	0/0	t0036	6814	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0037	6814	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0038	6815	1	0	0	0	1	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0039	6818	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0040	6815	1	0	0	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0041	6813	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0042	6813	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0043	6813	1	0	0	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0044	6804	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0045	6805	1	0	0	0	1	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0046	6815	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0047	6815	1	0	1	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0048	6807	1	0	1	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0049	6807	1	0	1	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0050	6808	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0051	6807	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0052	6807	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0053	6845	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0054	6814	1	0	0	0	1	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0055	6815	1	0	0	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0056	6815	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0057	6814	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0058	6815	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0059	6815	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0060	6815	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0061	6815	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0062	6815	1	0	0	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0063	6815	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0064	6813	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0065	6815	1	0	0	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0066	6819	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0067	6818	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0068	6819	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0069	6818	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0070	6817	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0071	6818	1	0	0	1	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0072	6818	1	0	0	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0073	6818	1	0	0	0	0	1	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0074	6818	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0075	6818	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0076	6804	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0077	6804	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0078	6814	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0079	6804	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MALT1_chr18_58666465_58759477	0/0	t0080	6804	1	1	0	0	0	0	copy fasta	MALT1	chr18	58666465	58759477
MAL_chr2_95020708_95058992	1/1	t0001	623	321	68	63	146	8	34	copy fasta	MAL	chr2	95020708	95058992
MAL_chr2_95020708_95058992	0/0	t0002	623	2	1	1	0	0	0	copy fasta	MAL	chr2	95020708	95058992
MAL_chr2_95020708_95058992	0/0	t0003	623	1	1	0	0	0	0	copy fasta	MAL	chr2	95020708	95058992
MAMDC2_chr9_70038848_70231972	0/1	t0001	1291	206	59	42	83	6	15	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0002	1291	51	4	3	38	0	6	copy fasta	MAMDC2	chr9	70038848	70231972