JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAMDC2_chr9_70038848_70231972	1/0	t0003	1291	42	22	10	3	2	4	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0004	1291	27	1	9	12	1	4	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0005	1290	6	0	0	6	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0006	1291	2	0	0	0	0	2	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0007	1291	2	0	0	0	1	1	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0008	1291	2	0	0	2	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0009	1291	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC2_chr9_70038848_70231972	0/0	t0010	1291	1	1	0	0	0	0	copy fasta	MAMDC2	chr9	70038848	70231972
MAMDC4_chr9_136847346_136865799	1/1	t0001	268	349	82	80	131	12	42	copy fasta	MAMDC4	chr9	136847346	136865799
MAMDC4_chr9_136847346_136865799	0/0	t0002	268	1	0	0	1	0	0	copy fasta	MAMDC4	chr9	136847346	136865799
MAML1_chr5_179727822_179782283	0/0	t0001	2698	166	31	37	79	3	16	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0002	2698	59	3	15	32	5	4	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/1	t0003	2699	41	6	9	20	0	5	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0004	2699	27	0	2	23	0	2	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	1/0	t0005	2698	26	23	2	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0006	2698	9	8	1	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0007	2699	7	3	4	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0008	2698	4	0	1	1	2	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0009	2698	4	3	1	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0010	2698	2	2	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0011	2698	2	0	0	0	2	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0012	2698	2	2	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0013	2698	2	2	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0014	2699	1	1	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0015	2699	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0016	2698	1	1	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0017	2698	1	0	0	0	1	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0018	2698	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0019	2698	1	0	0	0	0	1	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0020	2698	1	1	0	0	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0021	2698	1	0	0	0	1	0	copy fasta	MAML1	chr5	179727822	179782283
MAML1_chr5_179727822_179782283	0/0	t0022	2699	1	0	0	1	0	0	copy fasta	MAML1	chr5	179727822	179782283
MAML2_chr11_95971598_96348195	0/0	t0001	3651	51	6	15	16	4	10	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	1/1	t0002	3651	31	5	7	12	2	3	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0003	3651	25	7	2	12	0	4	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0004	3651	15	11	2	1	0	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0005	3651	9	3	2	3	0	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0006	3651	9	1	6	0	1	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0007	3651	8	6	0	1	1	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0008	3651	8	6	0	0	0	2	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0009	3651	7	6	0	0	0	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0010	3651	7	0	3	2	0	2	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0011	3649	5	5	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0012	3651	5	5	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0013	3651	4	0	1	0	0	3	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0014	3649	4	4	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0015	3651	3	0	0	2	0	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0016	3651	2	0	0	0	0	2	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0017	3651	2	0	1	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0018	3651	2	0	2	0	0	0	copy fasta	MAML2	chr11	95971598	96348195