JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAML2_chr11_95971598_96348195	0/0	t0019	3651	2	1	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0020	3651	2	0	0	0	0	2	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0021	3651	2	0	1	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0022	3649	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0023	3651	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0024	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0025	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0026	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0027	3651	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0028	3651	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0029	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0030	3651	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0031	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0032	3651	1	0	0	0	0	1	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0033	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0034	3651	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0035	3651	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0036	3651	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0037	3651	1	0	1	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0038	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0039	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0040	3651	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0041	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0042	3651	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0043	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0044	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0045	3649	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0046	3651	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0047	3651	1	0	0	1	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML2_chr11_95971598_96348195	0/0	t0048	3651	1	1	0	0	0	0	copy fasta	MAML2	chr11	95971598	96348195
MAML3_chr4_139711753_140159184	0/1	t0001	3428	30	9	9	3	2	6	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0002	3428	28	13	7	4	2	2	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0003	3429	9	2	2	4	1	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0004	3428	6	2	2	1	0	1	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0005	3428	5	3	2	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0006	3432	5	2	1	2	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0007	3428	4	0	1	1	0	2	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0008	3431	4	0	1	0	0	3	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0009	3431	4	0	0	1	0	3	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0010	3428	3	3	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0011	3428	3	2	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	1/0	t0012	3428	3	1	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0013	3434	3	3	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0014	3434	3	1	2	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0015	3428	2	2	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0016	3428	2	2	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0017	3428	2	2	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0018	3428	2	0	2	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0019	3428	2	0	1	0	1	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0020	3431	2	0	0	1	0	1	copy fasta	MAML3	chr4	139711753	140159184