JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAML3_chr4_139711753_140159184	0/0	t0021	3431	2	0	2	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0022	3434	2	2	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0023	3434	2	2	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0024	3428	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0025	3429	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0026	3428	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0027	3428	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0028	3428	1	0	0	0	0	1	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0029	3428	1	0	0	0	1	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0030	3429	1	0	0	0	0	1	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0031	3428	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0032	3428	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0033	3428	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0034	3428	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0035	3428	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0036	3428	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0037	3428	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0038	3429	1	0	1	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0039	3428	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0040	3431	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0041	3431	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0042	3431	1	0	0	1	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0043	3434	1	0	0	0	1	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0044	3434	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0045	3434	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0046	3435	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAML3_chr4_139711753_140159184	0/0	t0047	3440	1	1	0	0	0	0	copy fasta	MAML3	chr4	139711753	140159184
MAMLD1_chrX_150358317_150519173	1/0	t0001	2492	95	42	17	27	1	7	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0002	2492	81	14	6	50	0	11	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0003	2492	21	2	10	4	3	2	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0004	2492	6	1	2	0	2	1	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0005	2492	5	4	1	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0006	2523	3	0	1	0	1	1	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0007	2523	2	0	0	1	1	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/1	t0008	2523	2	0	0	0	1	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0009	2509	1	0	0	1	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0010	2493	1	0	0	1	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0011	2492	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0012	2492	1	0	1	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0013	2492	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0014	2510	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0015	2492	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0016	2492	1	0	1	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0017	2501	1	0	0	1	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0018	2492	1	1	0	0	0	0	copy fasta	MAMLD1	chrX	150358317	150519173
MAMLD1_chrX_150358317_150519173	0/0	t0019	2492	1	0	0	0	0	1	copy fasta	MAMLD1	chrX	150358317	150519173
MAMSTR_chr19_48707725_48724725	0/0	t0001	611	196	25	31	120	7	13	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	1/1	t0002	611	176	70	31	39	5	29	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	t0003	611	5	0	3	0	2	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	t0004	611	3	0	1	0	0	2	copy fasta	MAMSTR	chr19	48707725	48724725