JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAMSTR_chr19_48707725_48724725	0/0	t0005	611	2	0	0	0	0	2	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	t0006	611	2	2	0	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	t0007	611	1	0	0	1	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAMSTR_chr19_48707725_48724725	0/0	t0008	611	1	1	0	0	0	0	copy fasta	MAMSTR	chr19	48707725	48724725
MAN1A1_chr6_119172205_119354761	0/0	t0001	3057	95	21	16	42	3	13	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	1/0	t0002	3057	67	33	13	13	3	4	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/1	t0003	3057	53	2	10	26	4	10	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0004	3057	39	9	11	17	0	2	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0005	3057	18	0	0	18	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0006	3057	12	2	1	6	1	2	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0007	3057	7	0	0	7	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0008	3057	5	5	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0009	3057	5	3	1	0	1	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0010	3057	5	0	3	0	0	2	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0011	3057	3	0	0	3	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0012	3057	3	3	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0013	3057	3	3	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0014	3057	3	2	0	0	1	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0015	3057	3	0	2	0	1	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0016	3057	3	2	1	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0017	3057	2	2	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0018	3057	2	0	0	2	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0019	3057	2	1	1	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0020	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0021	3057	1	0	0	0	0	1	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0022	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0023	3057	1	0	1	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0024	3057	1	0	1	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0025	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0026	3057	1	0	1	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0027	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0028	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0029	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0030	3057	1	1	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0031	3057	1	0	0	0	0	1	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0032	3057	1	0	0	0	0	1	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0033	3057	1	0	0	0	0	1	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0034	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0035	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0036	3057	1	1	0	0	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0037	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0038	3057	1	0	0	0	0	1	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A1_chr6_119172205_119354761	0/0	t0039	3057	1	0	0	1	0	0	copy fasta	MAN1A1	chr6	119172205	119354761
MAN1A2_chr1_117362449_117533872	0/0	t0001	6645	13	1	2	8	0	2	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0002	6645	12	0	0	11	0	1	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0003	6655	10	0	3	7	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0004	6655	10	0	3	6	1	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0005	6655	9	0	2	7	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0006	6645	7	1	4	2	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0007	6647	6	0	0	6	0	0	copy fasta	MAN1A2	chr1	117362449	117533872