Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AQP3_chr9_33436160_33452593	0/0	t0038	948	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0039	948	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0040	938	1	1	0	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0041	947	1	1	0	0	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP3_chr9_33436160_33452593	0/0	t0042	947	1	0	0	1	0	0	copy fasta	AQP3	chr9	33436160	33452593
AQP4_chr18_26847043_26870707	1/1	t0001	4187	113	38	24	33	4	12	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0002	4187	111	2	30	67	6	6	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0003	4187	99	4	8	67	6	14	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0004	4187	20	3	12	3	0	2	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0005	4187	14	8	1	0	0	5	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0006	4187	13	9	3	0	0	1	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0007	4187	9	0	4	0	2	3	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0008	4187	7	7	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0009	4187	6	6	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0010	4187	5	5	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0011	4195	5	0	0	5	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0012	4187	5	0	0	5	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0013	4187	5	5	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0014	4187	3	3	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0015	4187	3	0	0	3	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0016	4184	3	3	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0017	4187	2	0	2	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0018	4187	2	0	2	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0019	4187	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0020	4187	1	0	0	1	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0021	4187	1	0	0	1	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0022	4187	1	0	0	1	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0023	4187	1	0	0	0	0	1	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0024	4187	1	0	0	0	0	1	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0025	4187	1	0	1	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0026	4187	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0027	4187	1	0	1	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0028	4187	1	0	0	1	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0029	4187	1	0	0	0	0	1	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0030	4187	1	0	0	1	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP4_chr18_26847043_26870707	0/0	t0031	4187	1	1	0	0	0	0	copy fasta	AQP4	chr18	26847043	26870707
AQP5_chr12_49956872_49970682	0/1	t0001	652	352	73	55	179	9	35	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	t0002	652	80	13	26	27	8	6	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	1/0	t0003	652	27	12	1	11	0	2	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	t0004	652	2	0	2	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	t0005	652	2	2	0	0	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	t0006	652	1	0	0	0	1	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	t0007	652	1	0	0	1	0	0	copy fasta	AQP5	chr12	49956872	49970682
AQP5_chr12_49956872_49970682	0/0	t0008	652	1	0	0	0	0	1	copy fasta	AQP5	chr12	49956872	49970682
AQP6_chr12_49967947_49982139	0/1	t0001	1696	338	53	46	192	17	29	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0002	1696	39	9	17	10	1	2	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	1/0	t0003	1696	24	22	1	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0004	1692	13	0	0	11	0	2	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0005	1696	10	4	1	0	0	5	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0006	1696	10	0	4	5	0	1	copy fasta	AQP6	chr12	49967947	49982139