JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAN1A2_chr1_117362449_117533872	0/0	t0208	6655	1	0	0	1	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0209	6659	1	0	0	1	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0210	6665	1	0	0	1	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0211	6661	1	0	0	0	0	1	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0212	6651	1	0	0	0	0	1	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0213	6683	1	0	0	1	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1A2_chr1_117362449_117533872	0/0	t0214	6655	1	0	0	1	0	0	copy fasta	MAN1A2	chr1	117362449	117533872
MAN1B1_chr9_137081985_137114183	0/0	t0001	608	213	49	38	102	5	19	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	t0002	608	152	36	32	58	11	15	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	t0003	609	21	1	4	6	2	8	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	t0004	609	6	0	4	0	0	2	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	t0005	608	6	6	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	t0006	608	4	0	0	4	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1B1_chr9_137081985_137114183	0/0	t0007	608	2	2	0	0	0	0	copy fasta	MAN1B1	chr9	137081985	137114183
MAN1C1_chr1_25611791_25789450	1/1	t0001	1669	230	73	49	85	4	17	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0002	1669	5	0	0	5	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0003	1669	2	2	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0004	1669	2	0	2	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0005	1669	2	0	0	2	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0006	1669	2	2	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0007	1669	1	0	0	1	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0008	1669	1	1	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0009	1669	1	0	0	1	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0010	1669	1	1	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0011	1669	1	1	0	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0012	1669	1	0	1	0	0	0	copy fasta	MAN1C1	chr1	25611791	25789450
MAN1C1_chr1_25611791_25789450	0/0	t0013	1669	1	0	0	0	0	1	copy fasta	MAN1C1	chr1	25611791	25789450
MAN2A1_chr5_109684927_109874625	0/1	t0001	3118	81	27	18	29	4	2	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0002	3119	67	4	14	37	2	10	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	1/0	t0003	3119	55	2	19	20	2	11	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0004	3119	19	12	6	0	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0005	3119	8	3	2	3	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0006	3119	6	6	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0007	3119	6	1	2	0	2	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0008	3119	6	0	3	0	2	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0009	3118	5	1	2	1	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0010	3119	5	0	0	5	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0011	3120	4	0	0	2	0	2	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0012	3120	3	0	2	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0013	3119	3	0	1	0	0	2	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0014	3118	3	3	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0015	3120	2	1	1	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0016	3119	2	2	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0017	3119	2	0	0	2	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0018	3119	1	0	0	0	1	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0019	3107	1	0	0	0	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0020	3119	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0021	3119	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0022	3119	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0023	3119	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625