JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAN2A1_chr5_109684927_109874625	0/0	t0024	3119	1	0	0	0	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0025	3119	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0026	3119	1	0	0	1	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0027	3119	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0028	3119	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0029	3118	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0030	3118	1	0	1	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0031	3118	1	0	1	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0032	3118	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0033	3118	1	0	0	0	1	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0034	3118	1	0	0	0	0	1	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0035	3118	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A1_chr5_109684927_109874625	0/0	t0036	3119	1	1	0	0	0	0	copy fasta	MAN2A1	chr5	109684927	109874625
MAN2A2_chr15_90898302_90927579	0/0	t0001	2942	150	18	31	92	1	8	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0002	2942	105	9	13	71	0	12	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	1/1	t0003	2942	72	16	20	8	12	14	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0004	2942	15	13	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0005	2942	9	8	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0006	2942	8	8	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0007	2942	8	0	3	0	2	3	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0008	2941	8	7	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0009	2942	4	0	0	0	0	4	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0010	2943	4	0	1	0	1	2	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0011	2943	3	0	1	2	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0012	2942	2	2	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0013	2942	2	2	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0014	2942	2	0	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0015	2942	2	0	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0016	2942	2	2	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0017	2942	2	0	2	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0018	2942	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0019	2942	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0020	2942	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0021	2942	1	0	0	0	0	1	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0022	2942	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0023	2943	1	0	0	0	0	1	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0024	2942	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0025	2942	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0026	2943	1	0	0	0	0	1	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0027	2943	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0028	2942	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0029	2942	1	0	1	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0030	2942	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0031	2942	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0032	2942	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0033	2942	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0034	2942	1	0	0	1	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2A2_chr15_90898302_90927579	0/0	t0035	2942	1	1	0	0	0	0	copy fasta	MAN2A2	chr15	90898302	90927579
MAN2B1_chr19_12641512_12671742	1/1	t0001	150	378	92	72	152	18	42	copy fasta	MAN2B1	chr19	12641512	12671742
MAN2B1_chr19_12641512_12671742	0/0	t0002	150	2	0	0	2	0	0	copy fasta	MAN2B1	chr19	12641512	12671742