JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAN2B2_chr4_6570189_6628362	0/1	t0001	2100	226	15	51	131	7	21	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0002	2099	53	23	5	17	2	6	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0003	2099	25	19	2	2	0	2	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0004	2101	9	0	2	6	0	1	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	1/0	t0005	2100	5	3	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0006	2098	4	4	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0007	1497	4	4	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0008	2099	4	0	3	0	1	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0009	2100	3	3	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0010	2099	3	3	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0011	2099	2	2	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0012	2100	2	1	0	0	0	1	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0013	2099	2	2	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0014	2099	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0015	1497	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0016	2099	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0017	2430	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0018	2100	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0019	2100	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0020	2100	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0021	2100	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0022	2100	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0023	2099	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0024	2100	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0025	2100	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0026	2098	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0027	2098	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0028	2098	1	0	1	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0029	2100	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0030	2099	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0031	2099	1	0	0	0	0	1	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0032	2099	1	1	0	0	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2B2_chr4_6570189_6628362	0/0	t0033	2100	1	0	0	1	0	0	copy fasta	MAN2B2	chr4	6570189	6628362
MAN2C1_chr15_75350792_75373607	1/1	t0001	139	380	82	72	178	16	30	copy fasta	MAN2C1	chr15	75350792	75373607
MAN2C1_chr15_75350792_75373607	0/0	t0002	139	2	0	2	0	0	0	copy fasta	MAN2C1	chr15	75350792	75373607
MANBAL_chr20_37284655_37322260	0/0	t0001	934	89	5	20	48	7	9	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0002	934	83	24	5	44	0	10	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/1	t0003	934	23	6	6	1	4	5	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0004	934	12	8	3	0	1	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0005	934	12	3	6	0	2	1	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0006	934	12	12	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0007	934	5	4	1	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0008	934	4	0	3	0	0	1	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0009	934	3	0	1	1	1	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0010	934	3	3	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0011	934	3	3	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0012	934	2	2	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0013	934	2	0	0	0	0	2	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0014	934	2	1	1	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0015	934	1	1	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260