JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MANBAL_chr20_37284655_37322260	0/0	t0016	934	1	0	0	1	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0017	934	1	1	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0018	934	1	1	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0019	934	1	1	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0020	934	1	0	0	0	0	1	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0021	934	1	1	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0022	934	1	0	1	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	1/0	t0023	934	1	0	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0024	934	1	0	0	0	0	1	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0025	934	1	0	0	0	1	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0026	934	1	0	0	0	0	1	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0027	934	1	1	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0028	934	1	1	0	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0029	934	1	0	0	0	0	1	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0030	934	1	0	0	1	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBAL_chr20_37284655_37322260	0/0	t0031	934	1	0	1	0	0	0	copy fasta	MANBAL	chr20	37284655	37322260
MANBA_chr4_102625770_102765968	0/0	t0001	1350	57	3	16	29	2	7	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	1/1	t0002	1362	55	4	12	21	6	10	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0003	1360	37	17	10	8	1	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0004	1352	14	0	4	7	1	2	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0005	1356	13	8	1	3	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0006	1362	11	5	3	1	0	2	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0007	1366	11	5	0	5	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0008	1352	10	9	1	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0009	1358	7	1	4	0	2	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0010	1348	7	3	0	3	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0011	1364	6	0	2	2	0	2	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0012	1356	5	5	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0013	1356	5	0	1	3	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0014	1358	5	3	1	1	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0015	1356	5	3	0	2	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0016	1358	4	1	1	1	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0017	1368	4	1	0	1	0	2	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0018	1364	3	1	0	1	0	1	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0019	1344	3	3	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0020	1362	2	2	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0021	1362	2	2	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0022	1346	2	0	2	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0023	1348	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0024	1350	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0025	1358	1	0	0	1	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0026	1351	1	0	1	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0027	1358	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0028	1346	1	0	0	1	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0029	1350	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0030	1350	1	0	0	1	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0031	1368	1	0	1	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0032	1348	1	0	0	1	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0033	1362	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968
MANBA_chr4_102625770_102765968	0/0	t0034	1360	1	1	0	0	0	0	copy fasta	MANBA	chr4	102625770	102765968