Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AQP6_chr12_49967947_49982139	0/0	t0007	1696	5	5	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0008	1696	3	3	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0009	1696	2	0	2	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0010	1696	2	0	2	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0011	1696	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0012	1696	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0013	1696	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0014	1696	1	0	1	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0015	1696	1	1	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0016	1696	1	0	0	1	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0017	1696	1	1	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0018	1696	1	0	1	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0019	1696	1	1	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0020	1696	1	0	0	0	0	1	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0021	1696	1	1	0	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP6_chr12_49967947_49982139	0/0	t0022	1696	1	0	1	0	0	0	copy fasta	AQP6	chr12	49967947	49982139
AQP7B_chr2_94582311_94609628	1/1	t0001	180	382	92	76	160	14	38	copy fasta	AQP7B	chr2	94582311	94609628
AQP7B_chr2_94582311_94609628	0/0	t0002	180	2	2	0	0	0	0	copy fasta	AQP7B	chr2	94582311	94609628
AQP7_chr9_33378191_33407568	0/1	t0001	2036	255	50	34	128	9	33	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0002	2036	86	19	20	37	2	8	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0003	2036	29	4	3	19	1	2	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0004	2035	17	0	10	0	3	4	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0005	2036	10	0	0	10	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0006	2031	6	5	1	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	1/0	t0007	2036	6	5	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0008	2036	5	0	1	3	1	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0009	2036	4	3	1	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0010	2036	3	3	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0011	2036	2	2	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0012	2036	2	0	2	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0013	2036	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0014	2025	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0015	2035	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0016	2036	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0017	2036	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0018	2036	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0019	2036	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0020	2036	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0021	2036	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0022	2036	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0023	2036	1	0	0	1	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0024	2036	1	1	0	0	0	0	copy fasta	AQP7	chr9	33378191	33407568
AQP7_chr9_33378191_33407568	0/0	t0025	2036	1	0	0	0	0	1	copy fasta	AQP7	chr9	33378191	33407568
AQP8_chr16_25211947_25233932	1/1	t0001	540	204	32	40	92	9	29	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0002	540	119	30	21	55	3	10	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0003	540	83	30	16	28	2	7	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0004	540	7	0	0	7	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0005	540	2	2	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0006	540	1	1	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0007	540	1	0	1	0	0	0	copy fasta	AQP8	chr16	25211947	25233932