JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAOA_chrX_43651299_43751817	0/0	t0011	2348	1	0	0	1	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0012	2348	1	0	0	1	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0013	2348	1	1	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOB_chrX_43761610_43887450	1/1	t0001	1008	164	23	41	68	9	21	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0002	1008	43	0	6	28	0	9	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0003	1008	10	10	0	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0004	1008	5	3	2	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0005	1008	3	3	0	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0006	1008	2	2	0	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0007	1008	1	1	0	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0008	1008	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0009	1008	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0010	1008	1	1	0	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0011	1008	1	1	0	0	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0012	1008	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAOB_chrX_43761610_43887450	0/0	t0013	1008	1	0	0	1	0	0	copy fasta	MAOB	chrX	43761610	43887450
MAP10_chr1_232800416_232814929	0/1	t0001	1797	230	16	54	117	8	34	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0002	1797	98	16	14	54	7	7	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0003	1797	38	3	4	25	2	4	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	1/0	t0004	1797	26	20	5	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0005	1797	15	15	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0006	1793	14	14	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0007	1797	6	4	2	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0008	1793	3	3	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0009	1797	2	0	1	0	1	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0010	1797	1	0	0	0	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0011	1797	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0012	1797	1	1	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0013	1797	1	1	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0014	1797	1	1	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0015	1797	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0016	1797	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0017	1797	1	0	0	0	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0018	1797	1	1	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0019	1797	1	0	1	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0020	1797	1	0	1	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0021	1797	1	0	0	0	0	1	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0022	1797	1	0	0	1	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP10_chr1_232800416_232814929	0/0	t0023	1793	1	1	0	0	0	0	copy fasta	MAP10	chr1	232800416	232814929
MAP1A_chr15_43512608_43536611	0/1	t0001	1855	319	68	47	156	13	34	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	1/0	t0002	1855	10	1	4	0	1	3	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	t0003	1855	6	5	1	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	t0004	1855	1	0	0	0	0	1	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	t0005	1855	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	t0006	1855	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	t0007	1855	1	1	0	0	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1A_chr15_43512608_43536611	0/0	t0008	1855	1	0	0	1	0	0	copy fasta	MAP1A	chr15	43512608	43536611
MAP1B_chr5_72102475_72214565	0/0	t0001	4385	77	23	12	31	2	9	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0002	4385	59	4	8	36	0	11	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/1	t0003	4384	40	0	9	25	3	2	copy fasta	MAP1B	chr5	72102475	72214565