JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP1B_chr5_72102475_72214565	0/0	t0004	4374	20	2	10	0	3	5	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0005	4384	18	15	2	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0006	4384	17	1	16	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0007	4386	12	7	3	0	1	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0008	4384	9	8	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0009	4385	9	0	0	9	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0010	4385	9	0	3	5	1	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0011	4386	8	4	1	3	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0012	4384	7	7	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0013	4384	7	1	3	3	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0014	4384	5	2	0	3	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0015	4381	5	1	0	3	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0016	4383	4	1	0	3	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0017	4375	4	1	2	0	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0018	4385	4	4	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0019	4374	3	0	2	0	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0020	4385	2	2	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0021	4384	2	2	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0022	4386	2	2	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0023	4384	2	0	1	0	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0024	4383	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0025	4385	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0026	4385	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0027	4383	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0028	4385	1	0	1	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0029	4385	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0030	4385	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0031	4374	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0032	4384	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0033	4386	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0034	4386	1	0	0	0	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0035	4375	1	0	0	0	0	1	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0036	4386	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0037	4385	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	1/0	t0038	4384	1	0	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0039	4386	1	0	0	1	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1B_chr5_72102475_72214565	0/0	t0040	4386	1	1	0	0	0	0	copy fasta	MAP1B	chr5	72102475	72214565
MAP1LC3A_chr20_34553718_34565345	0/1	t0001	591	178	36	38	87	3	13	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3A_chr20_34553718_34565345	0/0	t0002	599	157	37	22	77	5	16	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3A_chr20_34553718_34565345	1/0	t0003	599	59	8	8	29	3	10	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3A_chr20_34553718_34565345	0/0	t0004	599	10	9	1	0	0	0	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3A_chr20_34553718_34565345	0/0	t0005	568	1	0	0	1	0	0	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3A_chr20_34553718_34565345	0/0	t0006	591	1	0	1	0	0	0	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3A_chr20_34553718_34565345	0/0	t0007	599	1	0	0	0	0	1	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3A_chr20_34553718_34565345	0/0	t0008	599	1	0	0	0	1	0	copy fasta	MAP1LC3A	chr20	34553718	34565345
MAP1LC3B2_chr12_116554381_116581606	0/0	t0001	441	93	6	4	72	5	6	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	t0002	442	72	0	16	38	7	11	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	t0003	440	71	1	16	54	0	0	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	t0004	441	29	9	2	15	0	3	copy fasta	MAP1LC3B2	chr12	116554381	116581606
MAP1LC3B2_chr12_116554381_116581606	0/0	t0005	441	26	11	7	0	4	4	copy fasta	MAP1LC3B2	chr12	116554381	116581606