JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP1LC3B_chr16_87387336_87409774	0/0	t0020	1770	1	0	1	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0021	1770	1	1	0	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0022	1770	1	1	0	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0023	1770	1	0	1	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0024	1770	1	1	0	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0025	1770	1	0	1	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0026	1770	1	1	0	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0027	1770	1	0	0	1	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0028	1770	1	0	0	0	0	1	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0029	1770	1	0	1	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0030	1770	1	0	0	1	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0031	1770	1	1	0	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0032	1770	1	1	0	0	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0033	1770	1	0	0	0	0	1	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0034	1770	1	0	0	1	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3B_chr16_87387336_87409774	0/0	t0035	1770	1	0	0	1	0	0	copy fasta	MAP1LC3B	chr16	87387336	87409774
MAP1LC3C_chr1_241990490_242004098	1/1	t0001	764	389	80	60	194	14	39	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0002	765	37	4	12	13	4	4	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0003	764	6	4	0	0	0	2	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0004	764	4	0	0	4	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0005	764	3	0	0	3	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0006	764	3	2	1	0	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0007	765	3	0	2	0	0	1	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0008	764	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0009	764	1	0	1	0	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0010	764	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0011	764	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0012	764	1	1	0	0	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0013	764	1	1	0	0	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1LC3C_chr1_241990490_242004098	0/0	t0014	764	1	0	0	1	0	0	copy fasta	MAP1LC3C	chr1	241990490	242004098
MAP1S_chr19_17714480_17739513	1/1	t0001	109	290	88	76	68	14	42	copy fasta	MAP1S	chr19	17714480	17739513
MAP2K1_chr15_66381912_66496544	1/0	t0001	1366	217	77	49	70	2	18	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0002	1367	59	6	5	41	3	4	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/1	t0003	1366	51	3	13	17	7	10	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0004	1366	19	1	0	17	0	1	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0005	1366	10	0	2	5	1	2	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0006	1366	7	0	2	0	3	2	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0007	1367	2	1	1	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0008	1367	1	1	0	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0009	1367	1	0	0	1	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0010	1366	1	0	0	0	0	1	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0011	1366	1	0	0	1	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0012	1366	1	1	0	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0013	1366	1	1	0	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K1_chr15_66381912_66496544	0/0	t0014	1366	1	1	0	0	0	0	copy fasta	MAP2K1	chr15	66381912	66496544
MAP2K2_chr19_4085321_4129122	1/1	t0001	525	215	34	51	94	8	26	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	t0002	525	50	1	18	19	2	10	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	t0003	525	28	18	4	0	0	6	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	t0004	525	15	14	1	0	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	t0005	525	10	6	0	0	0	4	copy fasta	MAP2K2	chr19	4085321	4129122