JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP2K2_chr19_4085321_4129122	0/0	t0006	523	4	4	0	0	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	t0007	525	4	4	0	0	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	t0008	525	3	3	0	0	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K2_chr19_4085321_4129122	0/0	t0009	525	1	0	0	1	0	0	copy fasta	MAP2K2	chr19	4085321	4129122
MAP2K3_chr17_21279711_21320232	0/1	t0001	1212	191	45	30	80	2	33	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	1/0	t0002	1213	124	17	35	53	6	12	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0003	1211	15	6	1	5	1	2	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0004	1212	6	6	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0005	1210	5	5	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0006	1212	4	1	1	0	0	2	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0007	1218	3	0	0	2	0	1	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0008	1213	3	3	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0009	1213	2	2	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0010	1213	2	0	0	2	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0011	1213	1	1	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0012	1214	1	1	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0013	1212	1	1	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0014	1213	1	1	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0015	1212	1	0	1	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0016	1212	1	0	0	1	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0017	1210	1	1	0	0	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0018	1212	1	0	0	0	1	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0019	1212	1	0	0	1	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0020	1212	1	0	0	1	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K3_chr17_21279711_21320232	0/0	t0021	1200	1	0	0	1	0	0	copy fasta	MAP2K3	chr17	21279711	21320232
MAP2K4_chr17_12015877_12148828	1/0	t0001	2579	198	74	28	65	10	20	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0002	2579	61	8	14	28	1	10	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0003	2579	18	0	0	18	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0004	2580	18	3	0	15	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0005	2579	5	0	0	5	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0006	2579	4	0	0	4	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0007	2579	3	3	0	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0008	2579	3	0	0	3	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0009	2579	2	0	0	0	0	2	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/1	t0010	2579	1	0	0	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0011	2579	1	1	0	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0012	2579	1	0	1	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0013	2579	1	0	1	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0014	2579	1	0	0	1	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0015	2579	1	0	1	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0016	2579	1	0	1	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0017	2579	1	0	0	0	1	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0018	2579	1	1	0	0	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K4_chr17_12015877_12148828	0/0	t0019	2579	1	0	0	1	0	0	copy fasta	MAP2K4	chr17	12015877	12148828
MAP2K5_chr15_67537703_67812114	0/1	t0001	998	77	45	10	11	3	7	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	t0002	998	73	27	12	31	1	2	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	t0003	977	68	3	13	37	5	10	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	t0004	998	46	4	5	27	3	7	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	t0005	998	7	0	0	7	0	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	t0006	977	2	0	0	2	0	0	copy fasta	MAP2K5	chr15	67537703	67812114