JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MAP2K5_chr15_67537703_67812114	1/0	t0007	998	2	0	0	1	0	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	t0008	998	2	0	2	0	0	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K5_chr15_67537703_67812114	0/0	t0009	998	1	1	0	0	0	0	copy fasta	MAP2K5	chr15	67537703	67812114
MAP2K6_chr17_69409697_69558865	0/0	t0001	12400	71	6	16	37	2	10	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0002	12401	24	8	4	2	3	7	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0003	12396	24	2	1	20	0	1	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0004	12402	15	6	2	7	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0005	12401	11	4	3	2	0	2	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0006	12397	11	7	4	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0007	12401	10	2	0	6	0	2	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0008	12396	6	4	2	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0009	12401	4	1	2	0	1	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0010	12396	4	3	1	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0011	12401	3	0	1	0	2	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0012	12401	3	0	0	1	0	2	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0013	12396	3	1	0	1	1	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0014	12397	3	3	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0015	12396	3	0	0	3	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0016	12402	2	2	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0017	12401	2	0	2	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0018	12400	2	1	0	0	0	1	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0019	12399	2	0	0	2	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0020	12401	2	2	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0021	12400	2	0	0	0	0	2	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0022	12400	2	2	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0023	12399	2	0	1	0	0	1	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0024	12398	2	2	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0025	12396	2	1	0	0	1	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0026	12396	2	0	0	0	2	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0027	12396	2	0	2	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0028	12395	2	2	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0029	12401	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0030	12402	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0031	12401	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0032	12401	1	0	1	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0033	12402	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0034	12402	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0035	12401	1	0	0	0	0	1	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0036	12401	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/1	t0037	12401	1	0	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	1/0	t0038	12401	1	0	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0039	12401	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0040	12401	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0041	12401	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0042	12401	1	0	0	0	0	1	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0043	12400	1	0	0	0	0	1	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0044	12400	1	1	0	0	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0045	12400	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0046	12400	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865
MAP2K6_chr17_69409697_69558865	0/0	t0047	12400	1	0	0	1	0	0	copy fasta	MAP2K6	chr17	69409697	69558865